Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0795 ATGAAAGCAAGTGTTCTATACTCTTCACAAGAAAACACAAACTCATCTTCATATTCTTCTTCTCTTTCTCCTTCAATGGGAATGGTCTATGCAGACATGAGTACTCTCTCTCTTTGCCCCAACTATGGTGTTTCTGTTTCTACACATCAAGATTATTGCCCCCCTAATGGGGCTTCAAGCTGGGGTTTTCCATTCATGAAGGAATGCAATATTGCAAGAGACTTTGAGGAGCACCCCAACAATAATAGTGATGTTGTGATGGAAGGAAAAGGTTCTGATTGCAGTGATGGGGTTGAAGAAAACAGTGATAAAGTTAACATTAATGAAGAGAACCCTAATGAGAATCATGTTAGTGGAAAAGAGGTAAATACTAGTGGCCAGTCCAAACTTTGTGCAAGAGGGCATTGGAGACCTGCAGAAGATTCTAAGCTTAAGGAACTTGTGGCTCTTTATGGTCCTCAGAACTGGAACCTCATAGCTGAAAAGTTAGAGGGAAGATCAGGCAAGAGCTGTAGGTTAAGGTGGTTTAACCAGTTAGACCCAAGGATCAATAGGAGAGCATTCACTGAAGAAGAGGAAGAGAGACTAATGCAAGCACATAGGATTTATGGTAACAAATGGGCCATGATTGCAAGGCTTTTCCCTGGGAGAACAGATAATGCTGTGAAGAATCACTGGCATGTTATAATGGCTAGGAAGTATAGAGAACAATCAAGTGCTTATAGGAGGAGAAGGCTAAGCCAATCTGTTCAAAGAAGAATGGATGAAGATACTACAAACTTTATCTCTAAAGACAGTGAACCACTACCACCACCCTATTGTCTCAATCTCCCAAATAACTTGGCTACTTACCCATATGCATCATCATCTTTCCATGGAGCTTGTGGTGCTGGGGTTGAGTTTGGCTTGAATGGCTCACCCCACATGATTGGTGGAGGAAGAGAAGCAATAATCTCAAGCACCAAACAAGCCCCTCTTATTCATTTTGGCTTGTATCCTCAACAAACACCAATTGAACCATTTCCAGGTGTGTCCTTAGCCTCAGGTGCTAGAAGCAATGACATAGTGGGAGAGTATATTAACCAAACCAGATATTGGGACAAACCAAATGATACAGAACCTCCTCAACTTCAACCATCTGGTTTCTACCCTCATTATAATACATACCTGATGCCAATGCAGTATCATCAAAATTACAATAATTTTTACAGTTTAACATCAAATTCCACAGCAAAGGTGATGTTGGGCAGTGAACTTTCATTATCATCTGTGGCAGAACAACATAAAGATAATGAACTAGTCCTGAACAGTGACCCATCTTCAGATGCAATTCATCAAACTCCATTTATTGATTTCCTTGGAGTAGGAGCCACAACAACATGA 1383 0.4078 MKASVLYSSQENTNSSSYSSSLSPSMGMVYADMSTLSLCPNYGVSVSTHQDYCPPNGASSWGFPFMKECNIARDFEEHPNNNSDVVMEGKGSDCSDGVEENSDKVNINEENPNENHVSGKEVNTSGQSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLSQSVQRRMDEDTTNFISKDSEPLPPPYCLNLPNNLATYPYASSSFHGACGAGVEFGLNGSPHMIGGGREAIISSTKQAPLIHFGLYPQQTPIEPFPGVSLASGARSNDIVGEYINQTRYWDKPNDTEPPQLQPSGFYPHYNTYLMPMQYHQNYNNFYSLTSNSTAKVMLGSELSLSSVAEQHKDNELVLNSDPSSDAIHQTPFIDFLGVGATTT 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0795 460 PANTHER MYB TRANSCRIPTION FACTOR 26 458 - -
Lal15g0795 460 SMART sant 184 232 IPR001005 -
Lal15g0795 460 SMART sant 132 181 IPR001005 -
Lal15g0795 460 ProSiteProfiles Myb-like domain profile. 133 179 IPR001005 -
Lal15g0795 460 Gene3D - 133 184 - -
Lal15g0795 460 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 180 234 IPR017930 -
Lal15g0795 460 Gene3D - 186 259 - -
Lal15g0795 460 Pfam Myb-like DNA-binding domain 133 179 IPR001005 -
Lal15g0795 460 Pfam Myb-like DNA-binding domain 185 228 IPR001005 -
Lal15g0795 460 ProSiteProfiles Myb-like domain profile. 180 230 IPR001005 -
Lal15g0795 460 CDD SANT 136 177 IPR001005 -
Lal15g0795 460 MobiDBLite consensus disorder prediction 93 116 - -
Lal15g0795 460 CDD SANT 187 227 IPR001005 -
Lal15g0795 460 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 133 179 IPR017930 -
Lal15g0795 460 MobiDBLite consensus disorder prediction 1 22 - -
Lal15g0795 460 PANTHER MYB PROTEIN-RELATED 26 458 - -
Lal15g0795 460 SUPERFAMILY Homeodomain-like 133 226 IPR009057 -
Lal15g0795 460 MobiDBLite consensus disorder prediction 90 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0795 Lal-Chr15 5806975 5810486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0795 132 251 MYB Transcription Factor Family AT1G69560 88.333 7.24e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal15g0795 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0795 K09422 - gmx:100810632 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0795 15 5806975 5810486 Lal15g0795 15 5806975 5810486 ECH
Lal16g0828 16 5350448 5352241 Lal15g0795 15 5806975 5810486 LSH
Lal15g0795 15 5806975 5810486 Lal23g0803 23 10516446 10518256 LSH