Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0794 ATGGGTAGGTCACCTTGTTGTGAGAAGGTAGGGTTAAAGAAAGGGCCATGGACTCCAGAAGAAGATCAAAAGCTCATGGCTCATATAGAAGAATATGGCCATGGAAGCTGGCGTGCTTTGCCTGCCAAAGCTGGACTTCAAAGATGTGGGAAAAGCTGTAGACTAAGGTGGACTAACTACCTTCGACCAGATATAAAGAGAGGAAAGTTCAGCTTGCAGGAAGAACAAACCATTATTCAACTACATGCCCTTCTTGGGAACAGATGGTCAGCAATAGCGGCTCAACTGCCTAAGAGAACGGACAACGAGATCAAGAATTATTGGAACACACACCTCAAGAAAAGGCTAACCAAAATGGGAATAGATCCAACTACCCACAAGCCAAAAATCGATGCCCTCCATGGCTCAGGTGGCTGCCATACAAAGGATGTAGCCAACCTGAGCCACATGGCTCAATGGGAGAGTGCTCGTCTCGATGCTGAAGCCAGGTTGGTTAGAGAGTCAAAGTTACAACTCGGGTCATGCTCCAACAACACACAACCTGCACGCCTTGTCCTTAACAAAATCACAGCCCAACCATCACTTCCGCCATGCCTTGACGTTCTCAAAGCATGGCAGAGTTCATGGTTGAAGCCACAACAACAAATAACATCACCAACAACCAAACCCAACAACGATAATAAGATGTATCAACATAGCATGTACGCTATGATGCTATGCACCGATCATGATAATCTCGAGTCTCCAACTTCAACATTGAACTTCCCCGGAACTATGCTTCCTATATCCACCACCACCACCATTGCAATACTCAATGAAAACCTACTTCCTCTCACAACTATTACTAATAAGAACACCCCCACAACAATGGAAGAAAGTGAATCATGGAGGTATTTGAATTTAACCAAGCAGAATAACAACACCCTTGAAGAAGAGTTATTAGGTGAAAATAAAATAATGATGGAAAGTAACACATTATCAACTTTGCAAGATGATGACATCATGGTGGCTATGGAAGCATTTAGAACTTCTTCAGGGTACGACAATATTATTGTCCCAACCGTCCTCTCTAATACTACTGATACTACTACCAATGTAGTAATGGAAGGACTGAGAAGTAATGATGCAATGGTTTATGATTCCAACAACGATAACTTAGGAGCTGAAAATGAAGAGAACTTGGCAATCATGAACGGGGATGGAAGCATCTATAACGTAAACCTCGAGGAGAATAATAATCATAAGCATTACTGGAATAGCATACTTAACTTAATGAATGATTCACTGTCTGGTCCATCTGTTTTCTGA 1308 0.4235 MGRSPCCEKVGLKKGPWTPEEDQKLMAHIEEYGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIAAQLPKRTDNEIKNYWNTHLKKRLTKMGIDPTTHKPKIDALHGSGGCHTKDVANLSHMAQWESARLDAEARLVRESKLQLGSCSNNTQPARLVLNKITAQPSLPPCLDVLKAWQSSWLKPQQQITSPTTKPNNDNKMYQHSMYAMMLCTDHDNLESPTSTLNFPGTMLPISTTTTIAILNENLLPLTTITNKNTPTTMEESESWRYLNLTKQNNNTLEEELLGENKIMMESNTLSTLQDDDIMVAMEAFRTSSGYDNIIVPTVLSNTTDTTTNVVMEGLRSNDAMVYDSNNDNLGAENEENLAIMNGDGSIYNVNLEENNNHKHYWNSILNLMNDSLSGPSVF 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0794 435 Gene3D - 68 132 - -
Lal15g0794 435 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lal15g0794 435 CDD SANT 69 112 IPR001005 -
Lal15g0794 435 SMART sant 13 63 IPR001005 -
Lal15g0794 435 SMART sant 66 114 IPR001005 -
Lal15g0794 435 CDD SANT 16 61 IPR001005 -
Lal15g0794 435 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lal15g0794 435 Gene3D - 13 66 - -
Lal15g0794 435 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lal15g0794 435 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal15g0794 435 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal15g0794 435 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lal15g0794 435 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal15g0794 435 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 428 - -
Lal15g0794 435 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0794 Lal-Chr15 5759373 5762152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0794 1 260 MYB Transcription Factor Family AT3G01140 63.985 6.73e-103 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal15g0794 Myb_DNA-binding 3.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0794 K09422 - gmx:100799222 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0794 15 5759373 5762152 Lal15g0794 15 5759373 5762152 ECH
Lal15g0794 15 5759373 5762152 Lal23g0807 23 10596432 10599092 LSH