Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0790 ATGGCTACTATATTTTCTGCATGTTCACTCTCTAATTTTCTTTCCCCTACTATTTTTCACAACAAGGGCTTGTCCTTTATTGCCAAAGTTCCACTACTTCACCTTAAAAAACCTCTCCATGCTAAGTCTCTTACTTCTTTAGAAACTAACATATCACTTTCACCAGCAGTTCAAACCTTCTGGAAATGGCTTCAGAAAGAAGGTGTTGTATCAAACAAGACCCCAGTGAAGCCTAGTGTGGTTCCAGAAGGACTAGGACTTGTTGCAGTGAAAGATATTTCTAGGAATGAGGTTGTGTTGCAAGTACCTAAGAGGCTGTGGATTAATCCAGATGCAGTGGCAGCTTCAGATATTGGGAGTTTGTGCAGTGGTTTGAAGCCTTGGTTATCTGTTGCACTGTTTTTAATAAGAGAGAGGTCAAGAGATGATTCTGTTTGGAAGCACTATTTTGGTGTTCTACCTCAGGAAACTGATTCTACTATATATTGGTCAGAGGAGGAGCTTTTAGAGCTGCAAGGTACTCAACTTCTGAACACAACACTAAGTGTTAAAGAATATGTACATAATGAATTTCTGAAATTGGAAAAAGAAATCATACTCCCTAACAACAACCTTTTCCCTAATCCAATATCACTGGATGATTTCTTCTGGGCATTTGGAATTCTCAGATCAAGAGCATTTTCTCGACTTAGAAATGAAAATCTAGTTATAATTCCACTAGCAGACTTGATAAACCATAGTGCCAGAGTAACTACAGAAGATCATGCTTATGAAGTTAAAGGAGCAGCAGGGCTTTTCTCTTGGGATTACTTATTTTCCCTGAGAAGCCCTCTTTCTCTAAAGGCTGGGGATCAGGTATATATCCAATATGACTTAAATAAAAGCAATGCTGAGTTAGCTTTGGACTACGGTTTCATTGAACCAAATGCAGATCGAAATGCATATACCATGACACTGCAGATATCTGAATCAGACTCATTTTTTGATGACAAAATAGATATTGCTGAGTCCAATGGTTTTGGTAAGACGGTGTACTTCGACATCTTCTTCAACCGCCCGCTTCCACCGGGGTTGCTTACATATCTGAGACTTGTAGCTCTAGGAGGCACTGATGCTTTCCTATTGGAATCACTATTCAGAAACTCCATCTGGGGTCATCTTGAATTGCCCGTAAGTCGTGGCAATGAGGAGCTAATATGCCGAGTGGTTCGAGAAGCCTGCAAATCTGCCCTTGCTGGTTATCATACAACCATTGAAGAGGATAACAAGTTGAAAGAAACAAATATAGATTCAAGGCTTGCAATAGCAGTTGGTGTAAGAGAAGGGGAGAAGAAGGTATTGCAGCAAATTGATGAGATCTTCAAGGAGAAAGAATTGGAATTGGACCAGTTATCATATTATCAAGAAAGAAGACTTAAGGATCTTGGACTCTGTGGAGAAGCTGGTGAAATCATTGGAGGGGACCTTGAAAAATTCTTCTAA 1482 0.3974 MATIFSACSLSNFLSPTIFHNKGLSFIAKVPLLHLKKPLHAKSLTSLETNISLSPAVQTFWKWLQKEGVVSNKTPVKPSVVPEGLGLVAVKDISRNEVVLQVPKRLWINPDAVAASDIGSLCSGLKPWLSVALFLIRERSRDDSVWKHYFGVLPQETDSTIYWSEEELLELQGTQLLNTTLSVKEYVHNEFLKLEKEIILPNNNLFPNPISLDDFFWAFGILRSRAFSRLRNENLVIIPLADLINHSARVTTEDHAYEVKGAAGLFSWDYLFSLRSPLSLKAGDQVYIQYDLNKSNAELALDYGFIEPNADRNAYTMTLQISESDSFFDDKIDIAESNGFGKTVYFDIFFNRPLPPGLLTYLRLVALGGTDAFLLESLFRNSIWGHLELPVSRGNEELICRVVREACKSALAGYHTTIEEDNKLKETNIDSRLAIAVGVREGEKKVLQQIDEIFKEKELELDQLSYYQERRLKDLGLCGEAGEIIGGDLEKFF 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0790 493 ProSiteProfiles Plant LSMT protein-lysine methyltransferase family profile. 14 490 IPR011192 GO:0009507|GO:0030785
Lal15g0790 493 PANTHER [FRUCTOSE-BISPHOSPHATE ALDOLASE]-LYSINE N-METHYLTRANSFERASE, CHLOROPLASTIC 37 483 - -
Lal15g0790 493 Pfam SET domain 84 290 IPR001214 GO:0005515
Lal15g0790 493 SMART set_7 72 297 IPR001214 GO:0005515
Lal15g0790 493 PIRSF RMT_SET 1 491 IPR011192 GO:0009507|GO:0030785
Lal15g0790 493 Pfam Rubisco LSMT substrate-binding 323 447 IPR015353 -
Lal15g0790 493 SUPERFAMILY SET domain 53 311 IPR046341 -
Lal15g0790 493 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 37 483 - -
Lal15g0790 493 Gene3D - 307 471 IPR036464 -
Lal15g0790 493 CDD SET_RBCMT 66 306 IPR044431 GO:0016279|GO:0018022
Lal15g0790 493 Gene3D set domain protein methyltransferase, domain 1 53 306 - -
Lal15g0790 493 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 315 485 IPR036464 -
Lal15g0790 493 ProSiteProfiles SET domain profile. 67 291 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0790 Lal-Chr15 5696247 5700844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0790 51 246 NAC Transcription Factor Family AT3G56570 25.616 4.10e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lal15g0790 SET 3.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0790 K00592 - gmx:100818113 795.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0790 15 5696247 5700844 Lal15g0790 15 5696247 5700844 ECH
Lal16g0824 16 5316815 5320559 Lal15g0790 15 5696247 5700844 LSH