Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0772 ATGGCGGTATCTGATGGGTCCCCTACCCCACAGATGGTTGGCAATGCTTTTGTGGAGCAGTATTACTCTATTCTGCATCAAAATCCAGATCAGGTTCACAGATTTTACCAGGAATCTAGTGTTCTAAGCCGACCTGAAGAAGATGGTACCGTGACAACTGTGACTACTATTGTCGACATCAATAAAAAGATACTCTCCCAGGATTATACAAGCTTTAGGGTAGAGATTCTGAGTGCTGATGCTCAGCCTTCATATAAGGATGGAGTAGTGGTTCTAGTTACTGGCTGCTTAACTGGAAGTGACAATCTGAAAAGGAAGTTCACTCAGTCATTTTTCCTGGCTCCACAGGACAAAGGCTACTTTGTCTTGAATGATCTTTTTAGATACATTGATGAGTATAAGTCAGTTGATATTGAGTCTGTGCCAGAAATTGTTGCTGAAGAAATTGCTCCAACAGATGTTTTGATTCCAGAGTCTGAGCCCATTCAAGTTCCCGAAAACATTCCAGTTGCTCCTAGTCAAACTGCTGTTCTGGACACTGACATCATTGTCAGCAAAGAAGTGAGTGAACCAATAGAGAATGGGAAATTATCAGTTGCTGAAAACGTGGTTCCTGTTACTATTGTGAAGGAGCCAATTCATCAGGAGCATCTCCCAATCACGGAGAAAGCTGCTTCTCCTACACAGGAGGACCTTCCAAAGAAATCTTTTGCATCCATTGTGAGTGCACTGAAAGAGAATGCTGCTCCCTTCCATGTGAGGGTTTCCCCAGTGAAACCGGTAGAACGACCACGCTTATCTAGCATTCCTGCACCTGCAACTGCAACACCAGTGCCTAGACCTGAAATTGCATTGGAAAAGAATAATGAGAGTTCAGGTAAGGCTCATGCAATATTTGTTGCAAATTTGCCTATGAATGCAACAGTAGAACAACTGGAACAGGCTTTCATAAAATTTGGGCCCATTAAACCTGATGGTGTTCAAGTTAGAAGTAACAAGCAACAGGGATCTTGTTTTGGCTTTGTGGAATTTGAGTCCGCTACTTCAATGCAAAGTGCACTTGAGGCCTCTCCTCCTGTTGTGTTGGACAACCGTAAGCTTTCAGTCGAAGAAAGGCGAGCTAATAATGACAGGGCTAGATTTTCATCAGGACGAGGTGGATACCGAAACGACTTCAGGGGCCGTGGAAACTTCGGTGGCGGCAGGGGATTTTCTGGTAGAAATGATTTTGAGAAGCGCGGTGAGTTTAGTGGCAGAGCCCGAGGCGGTAACAATAATGGCGGTGGACGTAGCAATGGAGAATCTGCAGCAAGGGGTGGTTATCAGAATGGAGGAGGAAAGGGCCCTCGTCAACCAGTGAAAGTTTAA 1368 0.4466 MAVSDGSPTPQMVGNAFVEQYYSILHQNPDQVHRFYQESSVLSRPEEDGTVTTVTTIVDINKKILSQDYTSFRVEILSADAQPSYKDGVVVLVTGCLTGSDNLKRKFTQSFFLAPQDKGYFVLNDLFRYIDEYKSVDIESVPEIVAEEIAPTDVLIPESEPIQVPENIPVAPSQTAVLDTDIIVSKEVSEPIENGKLSVAENVVPVTIVKEPIHQEHLPITEKAASPTQEDLPKKSFASIVSALKENAAPFHVRVSPVKPVERPRLSSIPAPATATPVPRPEIALEKNNESSGKAHAIFVANLPMNATVEQLEQAFIKFGPIKPDGVQVRSNKQQGSCFGFVEFESATSMQSALEASPPVVLDNRKLSVEERRANNDRARFSSGRGGYRNDFRGRGNFGGGRGFSGRNDFEKRGEFSGRARGGNNNGGGRSNGESAARGGYQNGGGKGPRQPVKV 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0772 455 MobiDBLite consensus disorder prediction 373 455 - -
Lal15g0772 455 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 367 IPR000504 GO:0003723
Lal15g0772 455 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 381 IPR000504 GO:0003723
Lal15g0772 455 PANTHER BNAA02G14660D PROTEIN 6 423 - -
Lal15g0772 455 Gene3D - 282 411 IPR012677 -
Lal15g0772 455 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 6 423 IPR039539 -
Lal15g0772 455 Gene3D - 2 136 - -
Lal15g0772 455 SUPERFAMILY RNA-binding domain, RBD 289 403 IPR035979 GO:0003676
Lal15g0772 455 ProSiteProfiles Nuclear transport factor 2 domain profile. 13 129 IPR018222 -
Lal15g0772 455 SMART rrm1_1 297 370 IPR000504 GO:0003723
Lal15g0772 455 Pfam Nuclear transport factor 2 (NTF2) domain 13 129 IPR002075 -
Lal15g0772 455 SUPERFAMILY NTF2-like 9 130 IPR032710 -
Lal15g0772 455 CDD NTF2 9 131 IPR018222 -
Lal15g0772 455 CDD RRM_SF 298 370 - -
Lal15g0772 455 MobiDBLite consensus disorder prediction 424 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0772 Lal-Chr15 5524533 5528893 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0772 K24983 - gmx:100805610 585.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0772 15 5524533 5528893 Lal15g0772 15 5524533 5528893 ECH
Lal16g0798 16 5175449 5180006 Lal15g0772 15 5524533 5528893 LSH
Lal15g0772 15 5524533 5528893 Lal23g0829 23 10740896 10745515 LSH