Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0717 ATGGCTCAGGTTCAGGCTCAGAATGTGGTGCAGGGTCCTAATGGTGCTGCTGGTGCTGGTGCTGAGAACCAGTTAGTGACGACGTCGCTTTACGTTGGAGATCTTGACCCTAGTGTGACAGATTCTCAGCTCTATGACCTGTTCAACCAATTGGGTCAGGTTGTGTCTGTTAGGGTTTGCAGGGACTTAACCACTGGGAGATCGCTCGGTTATGGCTACGTCAATTACAGCAACCCCCAAGATGCTGCCAGATCATTAGATGTTCTGAACTTCACTCCTCTCAATAACAAGTCCATCCGCATCATGTATTCTCACCGTGATCCCAGTATTCGTAAAAGTGGGTCAGGAAATATTTTTATTAAGAATCTGGACAGGGCAATTGACCACAAGGCATTACATGATACCTTTTCTTCATTTGGCAACATCCTTTCTTGCAAGGTGGCTACAGATTCATCTGGTAACTCAAAAGGTTACGGCTTTGTTCAATTTGATAATGAGGAATCTGCTCAAAAAGCCATTGAGAAGCTGAATGGTATGCTGCTGAATGATAAACAAGTTTTCGTGGGACCTTTCCTTCGGAAGCAAGAGAGAGAAGGTTCAGTTGACAAGGTAAAATTCAACAACGTTTTTGTGAAGAACCTATCTGAATCAACCACTGATGATGAACTGAAGAAGGTTTTTGGTGAGTTTGGACCAATTACCAGTGCTGTAGTGATGAGGGATGGGGATGGGAAATCAAGGTGCTTTGGATTTGTGAACTTTGAGAATACTGATGATGCTGCTCAAGCTGTTGAGGCTCTTAATGGGAAAAAGTTTGACGAAAAGGAGTGGTATGTTGGAAAAGCTCAAAAGAAATCTGAGAGAGAGCATGAGTTGAAAACTAAGTTTGAGCAGAGCATGAAGGAAGCAGCTGATAAATATCAAGGAGCAAACTTGTATGTGAAAAATTTAGATGATAGCATTGGTGATGAAAAACTTAAGGAGCTGTTCTCCCCATTTGGTACCATCACCTCTTGCAAGGTTATGAGAGACCCCAATGGTATAAGTCGAGGATCTGGATTTGTTGCATTCTCAACCCCTGATGAGGCATCTAGAGCTCTCTCGGAGATGAATGCCAAAATGGTGGTAAGCAAACCTCTTTATGTGACTCTGGCCCAACGGAAAGAAGATAGAAGAGCTAGACTGCAGGCTCAATTTGCCCAATTGCGCCCTGTTACAATGGCGCCCTCTGCTGCTCCTCGTTTGCCAATGTATCCTCCTGGTGGTCCAGGTATTGGTCAACAGATATTTTATGGTCAAGGCCCTCCTGCTATGATTCCTTCCCAGCCTGGGTTTGGGTATCAACAGCAACTTGTGTCTGGTATGAGGCCTGGTGGGGCTCCTGTGCCAAATTTCTTTATGCCAATGGTTCAGCAGGGACAACAGGGTCAGCGCCCAGGTGGAAGACGTGTCGGTGGAGTCCAACAGTCCCAGCAGCCTGTACCTCTTTTGCCACAGCAGATGCTTCCCAGGGGACGTGTGTATCGTTATCCTCCCCCTGGTAGGGGCATTCCTGAAGGTCCCATTCCTGGAGTTGCTGGAGGCATGTTTCCTGTTCCATATGACGTGAGCGGCGTGCCGTTGCGTGATGCAGGACTCTCCCAGCAAATTCCTATCGGAGCTTTGGCTTCTGCTCTGGCAAATGCTTCTCCAGAGCAGCAGAGGACGATGCTGGGTGAGAATCTTTACCCACTGGTGGAACAGTTGGAGCCCGAAAATGCTGCCAAAGTGACTGGCATGCTTCTGGAGATGGACCAGACCGAGGTTCTGCATTTGCTCGAGTCACCCGAGGCCCTGAAGGCGAAGGTGGGTGAGGCAATGGACGTCCTGAGGAATGTCGCACAGCAGCAGGCTGGCAGTGCGGCCGATCAGTTGTCTTCATTATCGTTGAATGACAACCTTGTTTCTTGA 1950 0.4769 MAQVQAQNVVQGPNGAAGAGAENQLVTTSLYVGDLDPSVTDSQLYDLFNQLGQVVSVRVCRDLTTGRSLGYGYVNYSNPQDAARSLDVLNFTPLNNKSIRIMYSHRDPSIRKSGSGNIFIKNLDRAIDHKALHDTFSSFGNILSCKVATDSSGNSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVFVGPFLRKQEREGSVDKVKFNNVFVKNLSESTTDDELKKVFGEFGPITSAVVMRDGDGKSRCFGFVNFENTDDAAQAVEALNGKKFDEKEWYVGKAQKKSEREHELKTKFEQSMKEAADKYQGANLYVKNLDDSIGDEKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALSEMNAKMVVSKPLYVTLAQRKEDRRARLQAQFAQLRPVTMAPSAAPRLPMYPPGGPGIGQQIFYGQGPPAMIPSQPGFGYQQQLVSGMRPGGAPVPNFFMPMVQQGQQGQRPGGRRVGGVQQSQQPVPLLPQQMLPRGRVYRYPPPGRGIPEGPIPGVAGGMFPVPYDVSGVPLRDAGLSQQIPIGALASALANASPEQQRTMLGENLYPLVEQLEPENAAKVTGMLLEMDQTEVLHLLESPEALKAKVGEAMDVLRNVAQQQAGSAADQLSSLSLNDNLVS 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0717 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 284 IPR000504 GO:0003723
Lal15g0717 649 CDD RRM3_I_PABPs 206 285 - -
Lal15g0717 649 PANTHER POLYADENYLATE-BINDING PROTEIN 17 633 - -
Lal15g0717 649 Gene3D - 11 116 IPR012677 -
Lal15g0717 649 SMART poly_2 563 626 IPR002004 GO:0003723
Lal15g0717 649 Gene3D - 293 395 IPR012677 -
Lal15g0717 649 CDD RRM4_I_PABPs 309 387 - -
Lal15g0717 649 PANTHER RNA BINDING PROTEIN 17 633 - -
Lal15g0717 649 SUPERFAMILY PABC (PABP) domain 491 641 IPR036053 GO:0003723
Lal15g0717 649 Gene3D - 117 189 IPR012677 -
Lal15g0717 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 106 IPR000504 GO:0003723
Lal15g0717 649 Pfam Poly-adenylate binding protein, unique domain 559 623 IPR002004 GO:0003723
Lal15g0717 649 Gene3D - 547 630 - -
Lal15g0717 649 SMART rrm1_1 208 280 IPR000504 GO:0003723
Lal15g0717 649 SMART rrm1_1 29 102 IPR000504 GO:0003723
Lal15g0717 649 SMART rrm1_1 117 189 IPR000504 GO:0003723
Lal15g0717 649 SMART rrm1_1 311 383 IPR000504 GO:0003723
Lal15g0717 649 SUPERFAMILY RNA-binding domain, RBD 207 390 IPR035979 GO:0003676
Lal15g0717 649 SMART rrm2_1 208 280 IPR003954 GO:0003676
Lal15g0717 649 SMART rrm2_1 29 102 IPR003954 GO:0003676
Lal15g0717 649 SMART rrm2_1 311 383 IPR003954 GO:0003676
Lal15g0717 649 SMART rrm2_1 117 189 IPR003954 GO:0003676
Lal15g0717 649 CDD RRM2_I_PABPs 114 190 IPR045305 -
Lal15g0717 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 100 IPR000504 GO:0003723
Lal15g0717 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 380 IPR000504 GO:0003723
Lal15g0717 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 185 IPR000504 GO:0003723
Lal15g0717 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 277 IPR000504 GO:0003723
Lal15g0717 649 SUPERFAMILY RNA-binding domain, RBD 28 196 IPR035979 GO:0003676
Lal15g0717 649 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 29 624 IPR006515 GO:0003723
Lal15g0717 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 387 IPR000504 GO:0003723
Lal15g0717 649 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 551 628 IPR002004 GO:0003723
Lal15g0717 649 CDD RRM1_I_PABPs 29 108 - -
Lal15g0717 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 188 IPR000504 GO:0003723
Lal15g0717 649 Gene3D - 193 292 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0717 Lal-Chr15 4997080 5002177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0717 27 648 Eukaryotic Initiation Factors Gene Family AT1G49760 74.051 0.0 909
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0717 K13126 - gmx:100780329 1007.67