Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0711 ATGAATGAGTCAAACGTAAACAAACAACTCCGTATCTCCTCGGATGGCCCGGTATCTATCCTGTGGGATATTGAAAATTGCTCTGTCCCAAGTGATGTCCGGCCTGAAGATGTAGCAGGTAATATAAGAATGGCTTTGCAAGTGCACCCAATAATTAAAGGAGCCGTAATGATGTTTTCTGCGTACGGGGATTTCAATGCTTTCCCTAGGCGACTTAGAGAGGGCTGTCAGAGAACTGGTGTTAAACTCGTTGATGTTCCGAATGGGAGAAAAGATGCTGCTGACAAAGCTATCTTGGTTGATATGTTTTTATTTGCTCTTGACAACCCTCCGCCGTCCTCTATAATGCTAATATCTGGAGATGTTGATTTTGCTCCAGCACTTCACATTCTCGGTCAGCGTGGATATACTGTAATTCTTGTCATCCCTGCTGGGGTGGGTGTTTCATCTGCCCTATGCAATGCTGGTAAATTTGTATGGGACTGGACTAGCGTGGCTCGTGGGGAAGGTTTTGTACCCCCCTCAAAGGCGTTACTGTCACCGCGTGGAAGTTCGAGTGAGCTTGCTGGATACCTGATGGGGTGCCATATCAATGACAACTCTGATGGACAAAATGAAGAAGAAGCAATACTTTATAGAGGGATGTCACAGAACTATTATAACTCGAGGGACTTCTCAATGGTGTCACAATCTTTGGCTGAATACGACTGTGGCACATCGAACATGTCTTGTTTTCCAACAACTGCGAGATCACATAGCCTTCCACCTGGATTAAATGATGTTTCAGGAGGACACATGCCTTCTAATGACCATAATGAAGGTGTGTTGTGGGTACAGCCTGGGGATTTAAATGGTCTCAAGGGGCAGCTAGTAAGGTTGCTTGAACTTTCGGGAGGATGCATGCCTCTGGCCCGAGTGCCAGCTGAGTACCAGAAAATGTATGGGAAGCCTCTATATATATCTGATTATGGGGCAATGAAGTTGGTCACTCTTTTCAAGAAGATGAGCGATGCACTAGCTGTTGAAGGGAAAGGGCATCATAAATTTGTGTATCTCAGAAACTGGAAGACATGCCCTAGTGCTCCCTCTTTGGCGCTGGCAAAGAAAGATAAGAAGAGAAAGGGGGTCCATGAAGAGAGTGCAATTATTTTCGCTGGCGGTTGCTCTTCAGATGAGTTATCGGAGGAAGAAAGAGCAGTCATAGGTGAACATGGTAATCATGGGAGAGCTGCCCCCAGAAGTGAAGTTGATGACCGTATTCTTGAGCAGTTCAAGTATGAGCTGCAAGAGATTCTAGTAAGCTATTCTTGTCAAATATTCTTAGGTTGTTTCGAGGCTGTATACCAGCAACGGTACAAGAAACAACTGGAATATCAGAGATTTGGTGTGGAGAAGTTGGAGGATTTGTTTGAGATTGTGAGTGATGTGGTAGTATTGCTTGAGGAACCAGTTAGCAAGCGGAAGTTCCTGGCTGCTGTGGATTGTTAA 1488 0.4509 MNESNVNKQLRISSDGPVSILWDIENCSVPSDVRPEDVAGNIRMALQVHPIIKGAVMMFSAYGDFNAFPRRLREGCQRTGVKLVDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTVILVIPAGVGVSSALCNAGKFVWDWTSVARGEGFVPPSKALLSPRGSSSELAGYLMGCHINDNSDGQNEEEAILYRGMSQNYYNSRDFSMVSQSLAEYDCGTSNMSCFPTTARSHSLPPGLNDVSGGHMPSNDHNEGVLWVQPGDLNGLKGQLVRLLELSGGCMPLARVPAEYQKMYGKPLYISDYGAMKLVTLFKKMSDALAVEGKGHHKFVYLRNWKTCPSAPSLALAKKDKKRKGVHEESAIIFAGGCSSDELSEEERAVIGEHGNHGRAAPRSEVDDRILEQFKYELQEILVSYSCQIFLGCFEAVYQQRYKKQLEYQRFGVEKLEDLFEIVSDVVVLLEEPVSKRKFLAAVDC 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0711 495 CDD PIN_limkain_b1_N_like 17 143 - -
Lal15g0711 495 Gene3D - 15 164 - -
Lal15g0711 495 ProSiteProfiles OST-type HTH domain profile. 282 354 IPR025605 -
Lal15g0711 495 PANTHER - 9 490 - -
Lal15g0711 495 CDD LOTUS 421 483 - -
Lal15g0711 495 Pfam OST-HTH/LOTUS domain 421 479 IPR025605 -
Lal15g0711 495 Pfam OST-HTH/LOTUS domain 284 349 IPR025605 -
Lal15g0711 495 Gene3D - 415 489 IPR041966 -
Lal15g0711 495 Gene3D - 282 351 IPR041966 -
Lal15g0711 495 Pfam NYN domain 18 157 IPR021139 GO:0004540
Lal15g0711 495 ProSiteProfiles OST-type HTH domain profile. 420 494 IPR025605 -
Lal15g0711 495 PANTHER LIMKAIN B LKAP 9 490 IPR024768 GO:0005777|GO:0010468|GO:1903231
Lal15g0711 495 CDD LOTUS 283 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0711 Lal-Chr15 4953195 4954682 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0711 18 168 C2H2 Transcription Factor Family AT5G61190 44.371 2.56e-29 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0711 - - gmx:100818186 812.372