Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0692 ATGGCTCAACCAACCAGCAACAACGGTTCCGATCTGAATCAACAGAATCAACAGCAACAATGGGTTCAGCAACAGCAACAGTCGCATCAGTATCAACAGCAATGGATGGCCATGCAATATCCAGCTACAGCTATGGCCATGATGCAACAACAGATGATGATGTATCCTCAACATTACATGCCTTATCTTCATTATCCACAACCGCCACATCACCAACTTCACCACATCAAACACCATACGCCGCCGCAGCACCAGCACAAGCAGCAACTCTCCGCCGACGAGATCAAGACGATCTGGCTCGGTGACCTTCACCATTGGATGGATGAAAACTACCTCCATAACTGCTTTGCTCACACCGGCGAGGTTGTATCAGCCAAGGTCATACGAAATAAGCTAACTGGTCAGTCAGAGGGATATGGATTTGTCGAGTTTTATTCGCGAGCAACAGCTGAGAAAGTCTTGCAGAACTATGGTGGTGCGACAATGCCAAATACCGATCAGCCATTTCGTATGAACTGGGCTTCATTCAGTATGGGTGAAAGGAGATCCTCTGATGCTACTTCTGAACTCTCTATATTTGTGGGGGACTTGGCCATAGAGGTTACTGATGTTATGCTGCAAGAGACTTTTGCTACCAGATATTCCTCTGTTAAGGGAGCTAAAGTTGTCATTGATGTTAATACTGGTCGTTCAAAAGGTTATGGCTTTGTTAGGTTTGGTGATGAAAATGAGAAGACAAGGGCAATGACTGAAATGAATGGTGTTTATTGTTCAAGTAGGCCTATGAGAGTAGGCGTTGCAACCCCAAAGAAAACTTATGGCTATCCTCAACAATATTCTTCACAGACACAGGCTGTGGTGTTGGCCGGTGGACATCCTTCTAATGGTGCTGTGACTCAAGGTTCCCAATCTGAAGGGGATCTCAACAACACAACAATATTTGTTGGAGGGCTTGATTCTGATATCGGTGATGAGGATCTCAGAGAACCATTTTTGAAATTTGGTGAGGTTGTCTCTGTGAAGATTCCAGTGGGTAAAGGGTGTGGTTTTGTTCAATTTGCTGAAAGAAAGAGTGCTGAGGAAGCAATTCAGGCATTGAATGGGACAGTGATTGGGAAGCAGACGGTGCGCCTTTCTTGGGGTCGCAGTCCAGGAAACAAGCAGTGGAGGAATGATTCTGATAGAAGCCATTATGGTGGTCAGGGTTATGGAGGCAATGGATATGCTGTGAGACAGAACCAGGATATAGCAATGAATTCTGCTGCTACACCTCAAGGAGCTTCTTCCTAA 1290 0.455 MAQPTSNNGSDLNQQNQQQQWVQQQQQSHQYQQQWMAMQYPATAMAMMQQQMMMYPQHYMPYLHYPQPPHHQLHHIKHHTPPQHQHKQQLSADEIKTIWLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKLTGQSEGYGFVEFYSRATAEKVLQNYGGATMPNTDQPFRMNWASFSMGERRSSDATSELSIFVGDLAIEVTDVMLQETFATRYSSVKGAKVVIDVNTGRSKGYGFVRFGDENEKTRAMTEMNGVYCSSRPMRVGVATPKKTYGYPQQYSSQTQAVVLAGGHPSNGAVTQGSQSEGDLNNTTIFVGGLDSDIGDEDLREPFLKFGEVVSVKIPVGKGCGFVQFAERKSAEEAIQALNGTVIGKQTVRLSWGRSPGNKQWRNDSDRSHYGGQGYGGNGYAVRQNQDIAMNSAATPQGASS 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0692 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 176 IPR000504 GO:0003723
Lal15g0692 429 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 22 427 - -
Lal15g0692 429 Gene3D - 95 175 IPR012677 -
Lal15g0692 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 269 IPR000504 GO:0003723
Lal15g0692 429 SUPERFAMILY RNA-binding domain, RBD 95 271 IPR035979 GO:0003676
Lal15g0692 429 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 22 427 - -
Lal15g0692 429 SMART rrm1_1 191 265 IPR000504 GO:0003723
Lal15g0692 429 SMART rrm1_1 97 172 IPR000504 GO:0003723
Lal15g0692 429 SMART rrm1_1 312 379 IPR000504 GO:0003723
Lal15g0692 429 CDD RRM3_NGR1_NAM8_like 310 381 - -
Lal15g0692 429 MobiDBLite consensus disorder prediction 382 406 - -
Lal15g0692 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 261 IPR000504 GO:0003723
Lal15g0692 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 165 IPR000504 GO:0003723
Lal15g0692 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 376 IPR000504 GO:0003723
Lal15g0692 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 383 IPR000504 GO:0003723
Lal15g0692 429 MobiDBLite consensus disorder prediction 1 23 - -
Lal15g0692 429 SUPERFAMILY RNA-binding domain, RBD 301 408 IPR035979 GO:0003676
Lal15g0692 429 CDD RRM1_SECp43_like 97 177 - -
Lal15g0692 429 Gene3D - 177 284 IPR012677 -
Lal15g0692 429 CDD RRM2_SECp43_like 189 268 - -
Lal15g0692 429 Gene3D - 291 415 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0692 Lal-Chr15 4802537 4807279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0692 95 380 Eukaryotic Initiation Factors Gene Family AT2G23350 28.716 2.00e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0692 - - gmx:100798089 594.349