Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0686 ATGGGTTCGGTTCCTTCAGAACTAAGCTTAGATTTAAGACCCACTTTTGTTCCCAAAACCATCACTCATTTTCTATCCACCCTTCCCTCTTCCCAAAACAACAAGCTTTCTCTCCTCAACGATTTCATTGCCCGTTTGGAACATGAATTCCGAAAGATCGATGCTTTCAAACGCGAACTACCTCTCTCCATGCTCCTCTTAAACGATGCAATTTCAGTTTTGAAAGAAGAATCAGAAAAATGTATGAGTTATAAATCTCAGCCAGTGTTGGAAGTGTTTATTCCTTTGAAGAAAGAGTGTGATGAGGAGGAGTATGAGGTAATTAATAACAAGGACAGGGAATGCAAAGATAAGAAGAATTGGATGAGTTCTGTTCAGCTTTGGAACACTACAACAACAACAACAACTAATAATGTCTATGACCAAACACAACATCATCATAAATTAGTTATCAAGAAAATTGAAGATGAAAGACAAACTGTGGCTGAGGACCCTTTTCAACCAAGCAGTAGTAGAAATGGAGGAGGAAGAGAATTTTTACCTTTTTCTACATGTACTTCTATTCCTGTGACAACAGTGGCACTGTCACCAACCAAAGAGATGAAAGAAAGTGATGTGAATAGACTTTCACTTTTGACCCCTCCTTTTGCAGTGAAGAACTTGAGAAAGGGATGTAGTTCAAGTGTATCTAGATGCAATTCCAATAGGGAACTTTCATCCTCTCCTCCTACAGCTTTGCCAAGTTTACGCACCGGATCGCTTCAGCAGCAGCATGTTTCTAGAAAGGAGAGGAGATGCTGGTCTCCGGAGTTGCACCGTCGATTCGTCAATGCCCTGCAGAAGCTTGGAGGTTCTCAAGTGGCAACACCGAAGCAAATTAGAGAATTCATGCAGGTTGATGGCCTAACGAATGACGAAGTCAAGAGCCATTTACAAAAATATCGACTTCATACACGTAGGGTGCCTTCTACAAATACTGATCAGCCTGTTGTAATTCTTGGAGGTTTGTGGATGTCCCAAGATCGGTGCAATGGCTCCTCGAAGGGTAGCAGTTCAGGGTCTGGTTCTCCTCAAAGTCCCCTTCACTTAGCTACTCGTTCCTGCCGAGGGACGGATAGCATGGAAGATGAGGAAGATGCAAAATCTGAGAGTTATAATTGGAAGAGTCACATTCACAACAAAACTGGAAAAGTTGGTGTATAG 1203 0.4198 MGSVPSELSLDLRPTFVPKTITHFLSTLPSSQNNKLSLLNDFIARLEHEFRKIDAFKRELPLSMLLLNDAISVLKEESEKCMSYKSQPVLEVFIPLKKECDEEEYEVINNKDRECKDKKNWMSSVQLWNTTTTTTTNNVYDQTQHHHKLVIKKIEDERQTVAEDPFQPSSSRNGGGREFLPFSTCTSIPVTTVALSPTKEMKESDVNRLSLLTPPFAVKNLRKGCSSSVSRCNSNRELSSSPPTALPSLRTGSLQQQHVSRKERRCWSPELHRRFVNALQKLGGSQVATPKQIREFMQVDGLTNDEVKSHLQKYRLHTRRVPSTNTDQPVVILGGLWMSQDRCNGSSKGSSSGSGSPQSPLHLATRSCRGTDSMEDEEDAKSESYNWKSHIHNKTGKVGV 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0686 400 Pfam Myb-like DNA-binding domain 264 315 IPR001005 -
Lal15g0686 400 PANTHER TRANSCRIPTION FACTOR HHO6 7 392 - -
Lal15g0686 400 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 7 392 IPR044787 GO:0003700|GO:0006355
Lal15g0686 400 MobiDBLite consensus disorder prediction 342 366 - -
Lal15g0686 400 MobiDBLite consensus disorder prediction 228 263 - -
Lal15g0686 400 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 264 319 IPR017930 -
Lal15g0686 400 SUPERFAMILY Homeodomain-like 260 320 IPR009057 -
Lal15g0686 400 MobiDBLite consensus disorder prediction 369 390 - -
Lal15g0686 400 Gene3D - 261 319 - -
Lal15g0686 400 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 262 317 IPR006447 GO:0003677
Lal15g0686 400 MobiDBLite consensus disorder prediction 228 256 - -
Lal15g0686 400 MobiDBLite consensus disorder prediction 342 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0686 Lal-Chr15 4748482 4752311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0686 6 338 G2-like Transcription Factor Family AT2G03500 40.556 1.75e-58 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lal15g0686 Myb_DNA-binding 5.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0686 - - mtr:MTR_4g086835 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0720 16 4650657 4653724 Lal15g0686 15 4748482 4752311 LSH
Lal15g1067 15 9023288 9026093 Lal15g0686 15 4748482 4752311 PCT