Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0668 ATGCTTTATTCCTTATTATATAACTCAAACTCTTCTTCCCAAGATGGGTTGAAATCAACTCATTCATTGGGTTTTGAGAGTGAGAAAGGAGAGTTAGTGAAGTGCCCTACAAGGATAGGGCACAAGAATGAGATTCCTGAGATAAAAGCTTTGGCAGCTTTGAAGAACCATAGTGAAGCTGAGAGGAGGAGGAGGGAAAGAATAAATGGTCATTTTGATACACTGCGTGCTTTTGTGCCCTCTACTGAAAAGCTTGATAAAGCCACATTATTGGGTGAAGTTATTAGCCAAGTGAAGGAATTGAAGAAAAATGCAATGGAAGCAAGTAAAGGCCTTGTAATCCCAAAAGATTCTGATGAAGTGAAAGTTGAACCATATAATGATGAAGGAGAAGGAAATGGATCAATATGTTACAAAGCATATATCTGTTGTGATTACACACCTGAGATACTATCTGACCTTAAACAAACACTTAATGCCCTTAAACTAAACCTAGTAAGGGCTGAAATATCAACTTTGGGAAACAGAATGAAGAATGTTTTTGTCTTTAAATGTTGCAAAGGGGACAATAGTAGTACTCATGTTGAAGCATGCAAAGCTGTTGAAAGTTTTGTTTACCAGGCTCTAAGTTCTGTATTAGATAAGGCTTCTAGCACATTGGAGTACTTACCAAGAACATCATATCCAAACAAAAGGAGAAGATTTTGCTCTATTCAAACTTCTGCTTCCTCATGCAACCATCAATCTTGTTCATTCTGA 759 0.3715 MLYSLLYNSNSSSQDGLKSTHSLGFESEKGELVKCPTRIGHKNEIPEIKALAALKNHSEAERRRRERINGHFDTLRAFVPSTEKLDKATLLGEVISQVKELKKNAMEASKGLVIPKDSDEVKVEPYNDEGEGNGSICYKAYICCDYTPEILSDLKQTLNALKLNLVRAEISTLGNRMKNVFVFKCCKGDNSSTHVEACKAVESFVYQALSSVLDKASSTLEYLPRTSYPNKRRRFCSIQTSASSCNHQSCSF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0668 252 Pfam Helix-loop-helix DNA-binding domain 56 101 IPR011598 GO:0046983
Lal15g0668 252 PANTHER DNA BINDING PROTEIN-LIKE 12 245 - -
Lal15g0668 252 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 56 104 IPR036638 GO:0046983
Lal15g0668 252 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 52 101 IPR011598 GO:0046983
Lal15g0668 252 Coils Coil 151 171 - -
Lal15g0668 252 PANTHER TRANSCRIPTION FACTOR BHLH30 12 245 IPR045847 GO:0003700|GO:0006355
Lal15g0668 252 Gene3D - 50 110 IPR036638 GO:0046983
Lal15g0668 252 SMART finulus 58 107 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0668 Lal-Chr15 4591022 4594073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0668 49 212 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 37.952 1.26e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal15g0668 HLH 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0668 - - gmx:100804756 325.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0668 15 4591022 4594073 Lal15g0668 15 4591022 4594073 ECH