Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0667 ATGGACCTCACCAAGAAGCGCAAAACTGAACACAACGGTGACGCCGCCGAATCTCCGCCACAATCACCATCTACCCTGGCCACCGCAGCCCTTACCTCCGATGACATCCGCAAGATCCTCCAACCTTTTACACAACACCAGCTTCTCGACCTCCTCCAATCTGCCTCTCTCCGCCACCCCGACGTCCTTGACTCCGTCCGCACCCTCGCCGACCGCGACACCGCCCTACGCAAACTCTTCGTCCGTGGCCTCTCCGGAGAAACCACCACCGACAACCTCCGCGCCGTGTTCTCCGCCTTCGATGAACTCGACGAGGCCATCGTTATTATGGACAAGACCACCGGAAAGTCCAAGGGCTACGGCTTCGTCACGTTCAAGCACGTCGACGGCGCAATCCTCGCACTGAAAGAGCCTAGCAAGAGAATCGACGGGAGGATAACGGTTACTCAGCTTGCAGCTTCTTCGGCGAGTTCGGCCACGACGGATGTTTCTGCGAGGAAAGTGTTTGTGGGGAACGTTCCGTTTGATATATCGCCGGAGAGATTGTTAGAGCACTTTCTTGCGTATGGGGAAATTGAAGAAGGGCCTTTAGGGTTTGATAAAGCGAATGGGAAGACAAGAGGGTTTGCTTTCTTTGTTTATAAAACGGAAGAAGGTGCTAGAGCTTCGCTGGCTGAGCCCGCCAAAATCATTGATGGTCATCAGGTGATTTGCAAATTAGCTGTGGATAACAAGAAAGCGAAACCTGGAGGAATTCCGGGCCAGGCACTGCCTTCAGGATTTGCAGGGAATGGCATGACTTTTCAGCAGCAGCAACAGCTGCAACCTTCTATGCATGCTCCTATGCTGGGATCACAATATGGTGGGAATACTAATAATTATGGGGTGCAGTCTTCAGTACCTTCATTTGGTAATCATGTACCGGCTAGTGGTGCTGGGTATGGGCATGGAGTTGGCAGTGCTTATGGTAATCTGCAATTTGGTGGGCCGGTTTCTGGTGACTATGGCACCCGGTTCCCTCCCAATTCTGCCGGAGCGCCTTCTGGGGGATACCCAGGTGGGGCACATTATGGTATGCCTCCAAATTCGCAGCATCCACAGCCCATGCCAATGCAAAGACCTCCTCAAGGAGGAATGTACCAAGGCGGGCCGCCGCCTTATTATTGA 1167 0.5338 MDLTKKRKTEHNGDAAESPPQSPSTLATAALTSDDIRKILQPFTQHQLLDLLQSASLRHPDVLDSVRTLADRDTALRKLFVRGLSGETTTDNLRAVFSAFDELDEAIVIMDKTTGKSKGYGFVTFKHVDGAILALKEPSKRIDGRITVTQLAASSASSATTDVSARKVFVGNVPFDISPERLLEHFLAYGEIEEGPLGFDKANGKTRGFAFFVYKTEEGARASLAEPAKIIDGHQVICKLAVDNKKAKPGGIPGQALPSGFAGNGMTFQQQQQLQPSMHAPMLGSQYGGNTNNYGVQSSVPSFGNHVPASGAGYGHGVGSAYGNLQFGGPVSGDYGTRFPPNSAGAPSGGYPGGAHYGMPPNSQHPQPMPMQRPPQGGMYQGGPPPYY 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0667 388 MobiDBLite consensus disorder prediction 339 388 - -
Lal15g0667 388 SUPERFAMILY RNA-binding domain, RBD 157 251 IPR035979 GO:0003676
Lal15g0667 388 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 356 - -
Lal15g0667 388 CDD RRM_RBM24_RBM38_like 166 241 - -
Lal15g0667 388 Gene3D - 67 161 IPR012677 -
Lal15g0667 388 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 166 248 IPR000504 GO:0003723
Lal15g0667 388 Gene3D - 162 273 IPR012677 -
Lal15g0667 388 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 154 IPR000504 GO:0003723
Lal15g0667 388 SMART rrm1_1 167 239 IPR000504 GO:0003723
Lal15g0667 388 SMART rrm1_1 78 150 IPR000504 GO:0003723
Lal15g0667 388 CDD RRM_RBM24_RBM38_like 77 151 - -
Lal15g0667 388 SUPERFAMILY RNA-binding domain, RBD 69 154 IPR035979 GO:0003676
Lal15g0667 388 MobiDBLite consensus disorder prediction 1 26 - -
Lal15g0667 388 PANTHER GEO13361P1-RELATED 1 356 - -
Lal15g0667 388 MobiDBLite consensus disorder prediction 363 388 - -
Lal15g0667 388 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 145 IPR000504 GO:0003723
Lal15g0667 388 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 168 235 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0667 Lal-Chr15 4583984 4588218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0667 149 353 C2H2 Transcription Factor Family AT2G19380 28.634 3.63e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0667 K12741 - gmx:100804230 430.254