Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0630 ATGGCTTCAGCTTCTGCAACTCTAAATTCACTGTCCTCTCTCTCCCTTCACACCCCTTCTCGTTTCTCTCTTTTCCCCACTCCCCACAAACTCACCTTCTCTCTCCACCCCAAAACCCCATCACTTATCTCCACCACCACCGTCACCAAATCAAAACCCTCAAATGAAAACGACACTGACACTATCTTATTCGACACCGTGAACCCAGAACAAGACCTCTCCTTCGACCCACCACAGCCTCCAGAAGACTTCATCCCGCCACCATCCATCGACGACGGACCTTTAGAAACCGAAGACGAAATCGCCGCCGCGTACGAAGAGCTATACGGCCCTGCATACAGCGGAGTGAGCGTGCTTGGTAACGATATACACGTGATGGACTCGAAGGTGAGGAAGGACACTGGGTTTGGGTCAAAAGTGAAGAAGGAGAAGATTCGTGATGGGTTTGAAGAGAGAGTGGTTCAGGTGAGGAGAGTGACGAAAGTGGTTAAAGGAGGGAAACAAATGAGGTTCAGAGCTATTGTAGTTGTTGGGGATAAAAAGGGAAATGTGGGTGTTGGTGTTGGAAAAGCTAAGGAGGTTATTGCTGCTGTTCAAAAATCTGCTATTGATGCTAGAAGGAATATAATCCCTGTTCCTTTGACCAAGTACTCCACTTTTCCTCATAGAGCCGATGGAGATTTTGGAGCTGCAAAGGTAATGCTCCGACCCGCTTCTCCGGGTACTGGAGTCATTGCTGGTGGGGCTGTGAGAATTGTTCTAGAAATGGCAGGTGTTGAGAATGCTTTAGGAAAGCAACTAGGAAGTAACAATGCACTCAACAATGCCAGAGCAACTGTTGTTGCTGTACAGAAAATGAGACAGTTTCGTGAGGTTGCTGAGCAACGAGGGATCCCAATGGAAGAATTATGGAAGTAA 918 0.4771 MASASATLNSLSSLSLHTPSRFSLFPTPHKLTFSLHPKTPSLISTTTVTKSKPSNENDTDTILFDTVNPEQDLSFDPPQPPEDFIPPPSIDDGPLETEDEIAAAYEELYGPAYSGVSVLGNDIHVMDSKVRKDTGFGSKVKKEKIRDGFEERVVQVRRVTKVVKGGKQMRFRAIVVVGDKKGNVGVGVGKAKEVIAAVQKSAIDARRNIIPVPLTKYSTFPHRADGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMRQFREVAEQRGIPMEELWK 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0630 305 ProSiteProfiles S5 double stranded RNA-binding domain profile. 149 212 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lal15g0630 305 SUPERFAMILY Ribosomal protein S5 domain 2-like 219 297 IPR020568 -
Lal15g0630 305 TIGRFAM rpsE_bact: ribosomal protein uS5 148 302 IPR005712 GO:0003735|GO:0006412|GO:0015935
Lal15g0630 305 Gene3D - 216 304 IPR014721 -
Lal15g0630 305 SUPERFAMILY dsRNA-binding domain-like 145 214 - -
Lal15g0630 305 Gene3D - 146 210 - -
Lal15g0630 305 Pfam Ribosomal protein S5, C-terminal domain 226 296 IPR005324 GO:0003735|GO:0005840|GO:0006412
Lal15g0630 305 PANTHER 30S RIBOSOMAL PROTEIN S5, CHLOROPLASTIC 5 305 - -
Lal15g0630 305 Hamap 30S ribosomal protein S5 [rpsE]. 126 302 IPR005712 GO:0003735|GO:0006412|GO:0015935
Lal15g0630 305 ProSitePatterns Ribosomal protein S5 signature. 166 198 IPR018192 -
Lal15g0630 305 PANTHER RIBOSOMAL S SUBUNIT 5 305 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lal15g0630 305 Pfam Ribosomal protein S5, N-terminal domain 149 213 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0630 Lal-Chr15 4349167 4352131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0630 149 289 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 32.886 2.76e-18 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0630 K02988 - gmx:100787105 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0630 15 4349167 4352131 Lal15g0630 15 4349167 4352131 ECH
Lal15g0630 15 4349167 4352131 Lal23g0943 23 11530851 11533975 LSH