Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0596 ATGGCGGAGGATGAGAATTTTGATTTTTCGGAACTGTTTCCTGTTGTTGATGACGATGATGATGATAAGACGTGTATTGATCTTCAGATGATTATGAAGATCCTTGATGAGGATCCTGGCTCGGTTGAAGAGTGTAGTCCCGTGGATTCTTCATTAAAAAATGGTTCGCCTGGTGAATCTGGCATCAATAATGCTTTTCAGCTTCAAAATGGGCCTCAAGTGTTAGAAGAACCAGTGTTTTCTGGGTTTGATTTTGTGGATTCAGACATGGGCAGTTCTCCATTCTTCTCAGATGTGTCTGATTCTGGGGCCAGGGTTTCAGTTGGCATATCTGTTTCTGCAGCAAATTCTATGGTTTACCATAAACATGAAAACCAGGAACCTCCATCTCAGGATTCCTCTTCCCCAAGTGTTTTCTCTGGTAGTTACAGGGACTCATTATCTCTGGGTGGAAGCGATGATATTTCCTACGCTGGAAGGATGGGAGTTTCTAAAAGTGAGATACCTGCCTACAGTGTTGAAACAAGTTTTCCCGAGGCTTATTCGAACAATATATCAGTTCATGGAGATGATTTGAATCAGAGTACGTGGAAGGGTGAAAACCAGAGCCAATTTATTCACATGGGAGAGGATGCTCCATCTGAAACTCAACCCCCAAACCTTCTCCCTCCAGCTACTTGCATGTCTTCCTCTTCTCTTTGCTGGTTCTACAACTTCTTCCTCTTCAATTCTGCAACATCTTTTTTGTCGTCTTCTTCTTCAACCCTGCAGAGTCCTCTGTGTCAACCCTTGCAACCTTATGCTTCTCACAGTTCTATCATTGACAACGGTGATGTAAATTTTGAAGACTTTGTTAAAGACACCATTGGGGGAGTTTCTGGGCATCAGGAAAATGACTCGTGTACATCTTTTGAAATATCAGTCATGGATGCTAATACACCTTTGCATGTTGCAACTTCTACCAATTCTGCGTTTTGTCAAGGCTCCCATGTTCCCAGTGATGCTAGTGACTACTATCTATCTTCGAAATGCTACCAGGGAACAGATGGTAGTCCTTTTGTTGCTGACTCATCTCTTGCTTTTTTGCCTGGTGGTATTTCTTCTCAGCTATGGACAAATAATGGAACAATGAGTAACACGAAGGCTGAAAATGTGGAGTTCTATGGTGATATGTCACATGTGAGTAGTGGCATGTACTCAAGCAGTACTGAGGGGGCATCTTTTCAAGATGGTCAATTAATGTTAACAGATAGTGGGTTTCCTTCATTTTTTCCTGATAATGTTATCTTTGAAGAGAAGGCATCTGTGCCACTTTCAGCTTGTGCTTCATACATGTCATATGGAGACCAATCACTTTGTTTAAAAGATGAAAGAAATGAACTGAATACACCTTACCAAAATAGTTTGCACAATGGTGATGCCAAGTTCAATATAGGTCAAGACATGAAACAGTTATGTAGTGCTTTTCCTTCTATGGAGTATCAGAGTTATGAATTTAAGCCCGAGGATAATCATACAGTTACAACATCTTCTCTAGCCAATCATAAGCAAGATATCTTTGATGGTACTGTTAGTAAGTTTCAAGGAAACATGGGCAATATGAATTTAAAAGCCGTGGACAAATCTTTGCCCTATGCCCAAGCATCAATTGTCAGTGAGAAGCAGTTTGGTTGTGTTAAGAGAGAAGGAGGAGGCAGAATGATTCAACATAAACATATCGACTCTCATCTTTCAAAAGGTAGTGCTGAAATTATCCGTGTTGAGGATGATCCTGATGTTTGCATTATTGAAGACATCAGTCACCCTGTGCCTACTAGGCAATATGCAGACATTGGAAATTCCCTTGCTATATCCCATTCTTCTAGTTATGTTGATTCCCGACCTTGCATGGCTGGAAGCACAAGGGTGAAGGCATGTGATGAGCGAAATATATTACGAGTTGCACTGCAGGATCTATCTCAGCCAAAGTCTGAAGTTAGCCCACCAGATGGATTGTTAGCAGTTTCTCTTTTAAGACATCAGAGAATTGCTTTATCATGGATGATTAAGAAGGAAACATCAAGCGTATATTGCTCAGGAGGAATTCTTGCAGATGATCAGGGACTTGGAAAAACTGTGTCCACTATTTCCTTAATATTAACAGAAAAACCACCAACACATAGTGTGTGCACCAATGCCCCAAAAGGTGAATTAGAAACTTTGAATCTGGATGCGGATGATGACATGCTTCCTCTGAATGATGGAGTGAAGAAAGAATGTAGATATCCAGTAAAGAGTACGAATTTGTTGATGCAGGCAAAAGGAAGGCCATCTGGTGGAACCCTTATTGTTTGTCCGACCAGCGTCCTGCGCCAATGGGCTGAGGAGTTGCGTAATAAGGTAACCAGCCAAGCAAATCTCTCTGTTCTTGTGTTCCATGGAAGCAATCGAACAAAAGATCCTTATGAGGTGGCCAAGTATGATGTTGTTTTGACAACTTACTCCATTGTCGGCATGGAGGTCCCAAAGCAGCCTCTAGTTGACAAAGATGAAGAAAAGGGTGGTTTTGAAGATCTTGCTGTACCGAGTAGGAAACGGAAGGAGCCTTCTAATTCTATTAGAAATGCCAAGAAGGGAATGAGCAACACAGTGCTTGAGGCTATGGCACGTCCTCTTGCAAAGGTGGCATGGTTTAGGGTTGTCCTGGATGAGGCGCAGAGCATAAAGAATTACAAAACTCAAGTTGCAAGGGCCTGCTGGGGTCTTCGTGCTAAGCGTAGATGGTGCTTGTCAGGGACTCCCATCCAGAATTCAATTGATGATCTATACAGTTATTTTAGATTTCTGAGATATGACCCTTATGCAGTCCATTCATCATTTTGTTTTATGATTAAGAACCCAATTAACAGGAATCCAACAAAAGGGTATAGAAAGCTACAAGCTGTCTTAAAGACAATAATGTTACGGCGGACCAAAGGTAGTCGATCACACGCGATAGCGGTGGTCGCGGATGTTGTCGGCCTTCCCCGCCACGAAATGGTATATAGCGGTGCGGTTGGCCGTCGTGCCCATCGCGGGATGATAAGAAGCAGAATTGTGCTTCAGAACCCGCTCCAGCGCACACTTCTTGATGGGGAACCTATTATTTCATTGCCTCCTAAATCTGTAGAGCTGAAAAAGGTTGATTTTTCACGGGAGGAACGCGATTTCTATTCCAAACTAGAAGCTGATTCACGTGCACAGTTTCAGGAATATGCTAATGCTGGAACCGTCAAGCAAAACTATGTCAATATTTTGCTTATGCTTCTGCGCCTTAGACAAGCTTGTGATCACCCTCTGCTTGTCAAGCATTACAATTCTGATTCTCTATGGAGATCTTCGGTTGAGATGGCAAAGAAGATTCCTCAGGAAAAACAAATATCACTTCTGAATTGTTTAGAGGCTTCATTGGCCCTCTGTGGCATCTGTAATGATCCTCCTGAAGATGCTGTTGTTTCTGTCTGTGGCCATGTTTTCTGCAACCAGTGCATTTGTGAACATCTTACCGGTGATGACAATCAGTGTCCTGCTACAAATTGCAAAACCGGACTAAGCACGTCTAAGGTGTTTTCAAAAGATACATTGAAAAGTTGTCTTTCTGAGCAGGGTTGTGATAATTTGTCTGGTTGCTCCGGTTCCAAAGTAGAGGAATCTGAGCCATGGTTTCAGAGTCAACCATATGATTCTTCGAAAATTAAGGCTGCACTTGAGGTGTTGCAGTCATTGTGTAAGGCACAATGCTATGCACCAAAAAGTATTTCTTCACATGGCACTACTGGGAAAAATACTGACTGCTCTGTGAACTCTTCTGATTCTAACGTAGGCAGATCCTTCCAGAATTTTCCTGAGAATCATAATTTGTCTGTGAATAGAAGCTCCAATGATTCAACCACTGTTCTAGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACTAGGATGCTAGATTTGCTTGAAGAGTGTCTTAAGAAATTTTCAATTCAGTATAGAAGGCTTGATGGAACAATGTCCGTTGTTGCCAGAGATAAGGCTGTTAAAGATTTTAACACTCTCCCTGAGGTATCAGTTATGATTATGTCTTTGAAGGCTGCCAGTCTTGGTCTAAACATGGTGGCAGCCTGCCATGTTCTTATGCTAGATTTATGGTGGAATCCTACAACTGAAGATCAAGCAATAGATAGAGCACATCGAATTGGGCAGACTCGTCCTGTGACTGTTTTGCGGTTAACTGTGAGAGATACAGTTGAAGATCGTATTTTAGCTTTGCAGCAAAAGAAGCGAAAGATGGTTGCATCTGCATTTGGGGAGGATGGAACTGGTGGTACTCAAAGTCGCCTTACAGTGGATGATTTAAAATACCTATTCATGATGTGA 4389 0.4208 MAEDENFDFSELFPVVDDDDDDKTCIDLQMIMKILDEDPGSVEECSPVDSSLKNGSPGESGINNAFQLQNGPQVLEEPVFSGFDFVDSDMGSSPFFSDVSDSGARVSVGISVSAANSMVYHKHENQEPPSQDSSSPSVFSGSYRDSLSLGGSDDISYAGRMGVSKSEIPAYSVETSFPEAYSNNISVHGDDLNQSTWKGENQSQFIHMGEDAPSETQPPNLLPPATCMSSSSLCWFYNFFLFNSATSFLSSSSSTLQSPLCQPLQPYASHSSIIDNGDVNFEDFVKDTIGGVSGHQENDSCTSFEISVMDANTPLHVATSTNSAFCQGSHVPSDASDYYLSSKCYQGTDGSPFVADSSLAFLPGGISSQLWTNNGTMSNTKAENVEFYGDMSHVSSGMYSSSTEGASFQDGQLMLTDSGFPSFFPDNVIFEEKASVPLSACASYMSYGDQSLCLKDERNELNTPYQNSLHNGDAKFNIGQDMKQLCSAFPSMEYQSYEFKPEDNHTVTTSSLANHKQDIFDGTVSKFQGNMGNMNLKAVDKSLPYAQASIVSEKQFGCVKREGGGRMIQHKHIDSHLSKGSAEIIRVEDDPDVCIIEDISHPVPTRQYADIGNSLAISHSSSYVDSRPCMAGSTRVKACDERNILRVALQDLSQPKSEVSPPDGLLAVSLLRHQRIALSWMIKKETSSVYCSGGILADDQGLGKTVSTISLILTEKPPTHSVCTNAPKGELETLNLDADDDMLPLNDGVKKECRYPVKSTNLLMQAKGRPSGGTLIVCPTSVLRQWAEELRNKVTSQANLSVLVFHGSNRTKDPYEVAKYDVVLTTYSIVGMEVPKQPLVDKDEEKGGFEDLAVPSRKRKEPSNSIRNAKKGMSNTVLEAMARPLAKVAWFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLRYDPYAVHSSFCFMIKNPINRNPTKGYRKLQAVLKTIMLRRTKGSRSHAIAVVADVVGLPRHEMVYSGAVGRRAHRGMIRSRIVLQNPLQRTLLDGEPIISLPPKSVELKKVDFSREERDFYSKLEADSRAQFQEYANAGTVKQNYVNILLMLLRLRQACDHPLLVKHYNSDSLWRSSVEMAKKIPQEKQISLLNCLEASLALCGICNDPPEDAVVSVCGHVFCNQCICEHLTGDDNQCPATNCKTGLSTSKVFSKDTLKSCLSEQGCDNLSGCSGSKVEESEPWFQSQPYDSSKIKAALEVLQSLCKAQCYAPKSISSHGTTGKNTDCSVNSSDSNVGRSFQNFPENHNLSVNRSSNDSTTVLGEKAIVFSQWTRMLDLLEECLKKFSIQYRRLDGTMSVVARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRKMVASAFGEDGTGGTQSRLTVDDLKYLFMM 1462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0596 1462 ProSitePatterns Zinc finger RING-type signature. 1161 1170 IPR017907 -
Lal15g0596 1462 SMART ultradead3 666 964 IPR014001 -
Lal15g0596 1462 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 504 1461 - -
Lal15g0596 1462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 655 983 IPR027417 -
Lal15g0596 1462 SMART ring_2 1146 1184 IPR001841 -
Lal15g0596 1462 SUPERFAMILY RING/U-box 1143 1189 - -
Lal15g0596 1462 Pfam SNF2-related domain 690 986 IPR000330 GO:0005524|GO:0140658
Lal15g0596 1462 Pfam Zinc finger, C3HC4 type (RING finger) 1146 1182 IPR018957 GO:0046872
Lal15g0596 1462 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 504 1461 - -
Lal15g0596 1462 MobiDBLite consensus disorder prediction 123 142 - -
Lal15g0596 1462 CDD SF2_C_SNF 1307 1414 - -
Lal15g0596 1462 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 685 945 IPR014001 -
Lal15g0596 1462 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1298 1457 IPR001650 -
Lal15g0596 1462 Pfam Helicase conserved C-terminal domain 1306 1404 IPR001650 -
Lal15g0596 1462 CDD DEXDc_SHPRH-like 670 983 - -
Lal15g0596 1462 Gene3D - 1045 1461 IPR027417 -
Lal15g0596 1462 ProSiteProfiles Zinc finger RING-type profile. 1146 1185 IPR001841 -
Lal15g0596 1462 Gene3D - 757 844 IPR038718 -
Lal15g0596 1462 Gene3D - 856 984 IPR038718 -
Lal15g0596 1462 SMART helicmild6 1321 1404 IPR001650 -
Lal15g0596 1462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1038 1461 IPR027417 -
Lal15g0596 1462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1139 1197 IPR013083 -
Lal15g0596 1462 Gene3D - 643 734 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0596 Lal-Chr15 4141070 4153312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0596 561 1461 RAD5 or RAD16-like Gene Family AT1G61140 57.204 0.0 936
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lal15g0596 SNF2_N 7.5e-57 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0596 - - lang:109332935 2475.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0596 15 4141070 4153312 Lal15g0596 15 4141070 4153312 ECH
Lal16g0657 16 4236017 4245924 Lal15g0596 15 4141070 4153312 LSH
Lal15g0596 15 4141070 4153312 Lal3g0077 3 458338 467277 PCT
Lal3g0077 3 458338 467277 Lal15g0596 15 4141070 4153312 PCT