Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0580 ATGGGACATGCATATGATGATAGGCTATATGTGTCTCTAGATGAGTTGTTGGATTTTAATGGTGAAAATGGTAGCAATAGGGGAAGGATGGGGAAGAAGAACTATGATAATGGTGAAACAACAGTGTTCAAATCCAAGAACCTTGAAACTGAAAGGAGGAGGAGGGAGAAACTTAGTAGTAGGCTTTTGATGCTGCGTTCATTAGTACCTATCATCACAAATATGAACAAATTAACCATTGTTGATGATGCTATCACATACATCAAGGTGCTGCAAGACAAAGTACAGAATCTCAGCCAAGAGCTTTATGAAATAGATGCAACTTTGGAGGAAATACCAGAGCCAAAGATTGTTGAAGTTGATGATGCACAAGAGATGAAGAATTGGGGTATACAGGAAGAGGTTAGGGTAACACAAATTGGTGAGAATAAACTATGGGTCAAGATGGTCATTGAGAAGAAAAGGGGAAGATTCCGGAAATTGATGGAGGCCATGAATGGTTTTGGCATGGAGTATATAGACACCAGTGTGACATCCATAAAAGGAGCATTTCTGATTACTGCATGCATAAGGGGCATGGATGGGGAAACACTTGAAGCTCAGCAAACTCAAGAGGTGCTCAAAGATATTAACAGTGCCACTTAG 645 0.4016 MGHAYDDRLYVSLDELLDFNGENGSNRGRMGKKNYDNGETTVFKSKNLETERRRREKLSSRLLMLRSLVPIITNMNKLTIVDDAITYIKVLQDKVQNLSQELYEIDATLEEIPEPKIVEVDDAQEMKNWGIQEEVRVTQIGENKLWVKMVIEKKRGRFRKLMEAMNGFGMEYIDTSVTSIKGAFLITACIRGMDGETLEAQQTQEVLKDINSAT 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0580 214 Gene3D - 37 107 IPR036638 GO:0046983
Lal15g0580 214 PANTHER TRANSCRIPTION FACTOR DYT1 15 210 - -
Lal15g0580 214 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 43 109 IPR036638 GO:0046983
Lal15g0580 214 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 15 210 - -
Lal15g0580 214 Coils Coil 81 108 - -
Lal15g0580 214 Pfam Helix-loop-helix DNA-binding domain 46 92 IPR011598 GO:0046983
Lal15g0580 214 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 42 91 IPR011598 GO:0046983
Lal15g0580 214 SMART finulus 48 97 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0580 Lal-Chr15 3999390 4000523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0580 43 210 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 46.023 2.12e-45 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal15g0580 HLH 2.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0580 - - gmx:100806159 231.106