Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0562 ATGTCTTCTCAAGTACGTGATCAACAGAACCATAACTTACACTTTTTCAAGGTCATTCTTGAAAGAAACATTCGATATGGAGACCATTTTTTTTATACAATTTTTCTCTTTCTTTCTCTCTCAGCATGCAAGAGGGTGCCAAAAGATTTTGTGAAAAGATGCTGGCAAGATATAACAAATCCAGTTTTTCTAAGGCTTCCAAATGGAACTGAAAATAAAGTTTATTGGACTAGGAAAAATGGTGATGTTTGGTTTTCCAATGGTTGGAAAGAATTTGCACAATACTTGTCATTGGAAGTGTCACAGTTTCTGGTTTTTCGATATGAAGGAAAATCTCTATTTCATGTTATCATATTTGGAAAACGTGCATTAGAAATAAAGTACCCTCCACCAGAAGATGAAGAGGTTAGCAATGACAGTGATCACTCCTTGAAAATTGTTGATGATTTTGATATAATTAACTGTAAAAGGCACAAATCTCCAAAACCATTTTCTCAAGCTCCTAAGAAAATGAAAACCAATCCAAAAGAAGAACATGAATACTACTCCAGCCATGCTAAAACTAGGCTTGAGAAGTGGAAATCCCATAATGCAGTTGTTAATAATACTAAGAACATTGGGGGCAGGAGCAGAGATCTTAATGAGAGAATCAATGCTTTCCACAAGAAAGTGAAGCAAAATTTCTACTCTGAGAATTGTTGGTTCACAAGTAAACTGCAGAAATCATACTTCCAAAGAGATCTCTTGGTCATACCAAAAAAATTTGCTAGAACAAATCTGCACATGAAGGAAGGAGAAACTACCCTTTGCTTCATGAAGGATGGTAAGGGCAGAACCTGGGATGTCATGATAAAGCACTATTCCGGCAATATACAAACTGCATTTGTTGGTGGTTGGATTAATTTTTTGAAGGACACTAATTTGAAAATAGGTGATGTTTGTGTCTTTGTGCTAAACAAGTGCAAGAAAGTTTCATTCTATGTTTTAAATTTTCCTTTTGAAGATGACTCTAGCCTTCAACACTTTGCAGAGCAAAAAGCGCTTTCTAATAGGCCTTCTTCATGCCTTAAAGACCTTGAAACTCCCAAAGCTAATATCAGAGTGTCATCCATTAATCACGTCACCATCCACATCAAGGATGGTTCATATCATTCGTCAATACCAATGAGCTTCATGAGGAATTACCTTACACTTGGTGGAAAAAAAGCCAAGTTGCGAGTTGGGAAGAGAACATGGGATGTAAAAGTGAAATATTATCAAACTAGAAATATTACTAAGGAA 1281 0.3583 MSSQVRDQQNHNLHFFKVILERNIRYGDHFFYTIFLFLSLSACKRVPKDFVKRCWQDITNPVFLRLPNGTENKVYWTRKNGDVWFSNGWKEFAQYLSLEVSQFLVFRYEGKSLFHVIIFGKRALEIKYPPPEDEEVSNDSDHSLKIVDDFDIINCKRHKSPKPFSQAPKKMKTNPKEEHEYYSSHAKTRLEKWKSHNAVVNNTKNIGGRSRDLNERINAFHKKVKQNFYSENCWFTSKLQKSYFQRDLLVIPKKFARTNLHMKEGETTLCFMKDGKGRTWDVMIKHYSGNIQTAFVGGWINFLKDTNLKIGDVCVFVLNKCKKVSFYVLNFPFEDDSSLQHFAEQKALSNRPSSCLKDLETPKANIRVSSINHVTIHIKDGSYHSSIPMSFMRNYLTLGGKKAKLRVGKRTWDVKVKYYQTRNITKE 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0562 427 ProSiteProfiles B3 DNA-binding domain profile. 234 332 IPR003340 GO:0003677
Lal15g0562 427 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 9 331 - -
Lal15g0562 427 CDD B3_DNA 235 332 IPR003340 GO:0003677
Lal15g0562 427 Gene3D - 6 123 IPR015300 -
Lal15g0562 427 SUPERFAMILY DNA-binding pseudobarrel domain 230 332 IPR015300 -
Lal15g0562 427 SMART B3_2 31 122 IPR003340 GO:0003677
Lal15g0562 427 SMART B3_2 235 332 IPR003340 GO:0003677
Lal15g0562 427 SUPERFAMILY DNA-binding pseudobarrel domain 29 121 IPR015300 -
Lal15g0562 427 Pfam B3 DNA binding domain 235 324 IPR003340 GO:0003677
Lal15g0562 427 Pfam B3 DNA binding domain 43 119 IPR003340 GO:0003677
Lal15g0562 427 Gene3D - 215 335 IPR015300 -
Lal15g0562 427 CDD B3_DNA 14 119 IPR003340 GO:0003677
Lal15g0562 427 PANTHER B3 DOMAIN-CONTAINING 9 331 - -
Lal15g0562 427 ProSiteProfiles B3 DNA-binding domain profile. 29 122 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0562 Lal-Chr15 3899975 3902195 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0562 45 335 B3 DNA Binding Superfamily AT3G18990 24.316 1.73e-18 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lal15g0562 B3 1.5e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0562 - - lang:109332968 698.353