Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0549 ATGGGTTCTTTATGGTTTCTCAAACTGTTTCTCAAATGCATTGACCATTTTGCATGGCCTCTTGTTGCTTTGGGGTATCCTCTATGTGCTTCCATACAAGCTATTGAGACTGATTCCTATACAGAAACTAGGAATTTGATCTCATATTGGATACTTTTCTCATTAATATACCTTTTTGAGTTTGCTTTCATGAGGCTTCTTCAATGGGTCCAATTCTGGCCTTACATTAAGCTAATGGTCATCTTCTGGCTTATCATACCTGACTTTGGACGAAGTTCTTCTGTTTATAGTCACCTTGTTCACTCAAGCATCTCCTTGAAACCACAAGCAGTCATAAGTAGGTTAAAGAACTGGAAGAAGTTATTTGTCAAGAAACAGGACTTTTTACAGCATGCAGAGAGATTTATAGAAGAGAATGGAACTGAAGCCTTAGCGAAACTGATTGCTAGCAAGAACACAACACATAATCCTGCTGTTGAAGCTGAAGCAACAAATGCAATTAGAGCTACGGATATGAAAGAAATGCAGCAGAAAGAGCACCATATGAACACAATTGGGAGAAAGCACAAAACAGAACACAAAGATGTCGAAGATTTGGAGGTGATAGAGAAAAAAACAATTTCTGCAATCAAGCGAGATATTCCTAGCGTGCCTAACCTTGCACCAATTCAGAATGCTTCATCGGCCATGGTGTGGAAAGACACAAATAGTGGAGAGCTTCCTCAGAGTTCAACAAACAAGGAAGTGCAGAAAGAGTGGACTTGCGCTATATGTCAAGTGACAACTACGAGTGAGAATAACTTGAATTCCCATCTTCATGGGAGAAAACACAAGGATGCCTGTGAAGCTCTGAAAGCAAAGATTAAGCTTGCTCCACAGAAGCTGAAATTCATTGAGGAATCGAAACAGATGAATATTTCGTATGCAGATATAGAGCCAAAGAATATCCAAATTTCACATGCAAAAGTGCATGCTCAAATAAGCAGGGAGACTGAAAAGAGTATACTTAATGATGGCTTAAAGATGAGATCGACTAGTACTCAGGAGAATAAAAAAACGCATGTTAGTGTTCTTGCGCCTGCAAATATGACTGGGCAGCTAAATGCCAAGACAAAGAATGGAGAGAGTGTAGTTAACAAGGTGTTTCAAGGGAAAGTTGTCATAGATCATAAGAAGGTGCAAGCACCGTCTAAGAACCTGGGTAAACCTGTTTTGGTGATTCCTTCCAAATTAAGATGTGAACTCTGCAATGTTAGTTGCACTAGTAAGGGTGACTTGGAATCTCATTTAACTGGTAAGAGGCACTTGGCTCAAATTCAAAACTAA 1326 0.3944 MGSLWFLKLFLKCIDHFAWPLVALGYPLCASIQAIETDSYTETRNLISYWILFSLIYLFEFAFMRLLQWVQFWPYIKLMVIFWLIIPDFGRSSSVYSHLVHSSISLKPQAVISRLKNWKKLFVKKQDFLQHAERFIEENGTEALAKLIASKNTTHNPAVEAEATNAIRATDMKEMQQKEHHMNTIGRKHKTEHKDVEDLEVIEKKTISAIKRDIPSVPNLAPIQNASSAMVWKDTNSGELPQSSTNKEVQKEWTCAICQVTTTSENNLNSHLHGRKHKDACEALKAKIKLAPQKLKFIEESKQMNISYADIEPKNIQISHAKVHAQISRETEKSILNDGLKMRSTSTQENKKTHVSVLAPANMTGQLNAKTKNGESVVNKVFQGKVVIDHKKVQAPSKNLGKPVLVIPSKLRCELCNVSCTSKGDLESHLTGKRHLAQIQN 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0549 441 Pfam Zinc-finger of C2H2 type 253 277 - -
Lal15g0549 441 Pfam Zinc-finger of C2H2 type 412 435 - -
Lal15g0549 441 Pfam TB2/DP1, HVA22 family 27 101 IPR004345 -
Lal15g0549 441 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 299 440 - -
Lal15g0549 441 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 1 297 - -
Lal15g0549 441 ProSitePatterns Zinc finger C2H2 type domain signature. 413 435 IPR013087 -
Lal15g0549 441 SUPERFAMILY beta-beta-alpha zinc fingers 404 439 IPR036236 -
Lal15g0549 441 Gene3D Classic Zinc Finger 388 441 - -
Lal15g0549 441 Gene3D Classic Zinc Finger 233 283 - -
Lal15g0549 441 PANTHER HVA22-LIKE PROTEINS 299 440 IPR004345 -
Lal15g0549 441 PANTHER HVA22-LIKE PROTEINS 1 297 IPR004345 -
Lal15g0549 441 SUPERFAMILY beta-beta-alpha zinc fingers 244 287 IPR036236 -
Lal15g0549 441 SMART ZnF_U1_5 250 284 IPR003604 GO:0003676|GO:0008270
Lal15g0549 441 SMART ZnF_U1_5 408 441 IPR003604 GO:0003676|GO:0008270
Lal15g0549 441 SMART c2h2final6 411 435 IPR013087 -
Lal15g0549 441 SMART c2h2final6 253 277 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0549 Lal-Chr15 3812125 3815878 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0549 255 439 C2H2 Transcription Factor Family AT5G61190 25.116 8.85e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal15g0549 TB2_DP1_HVA22 1e-16 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0549 15 3812125 3815878 Lal15g0549 15 3812125 3815878 ECH
Lal15g0549 15 3812125 3815878 Lal19g1479 19 17269011 17271791 PCT