Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0540 ATGGAGGACCAACTCCATCACCATACAAACTCAACTAACCCCTCTTCCACCACGCGCTTAAAGCTCTTCGGCTTCAACGTCCACCAACTCCAAGAAACATCAGACTCAACCCCCAAACCCACCTCCCCTGACTCCCCCGGCGGCGTAGAAGGTGACACCGCCGGCATATCCACTTCCTCCGGTGACCGCAAATACGAGTGCCAGTACTGTTGCCGAGAATTCGCTAACTCTCAAGCACTAGGAGGACACCAAAACGCGCACAAGAAAGAGCGCCAACAACTCAAACGCGCTCAGTTACAAGCCACTCGAAACGCCGCTGTTTCCTTCGCTCGCAACCCGATCATCTCCGCCTTTGCTCCGCCTCCTCACCTTCTTGCTCCGCCGGGTTCCATGATGGTGCCGGCGGGGACACCATCTTGGGTCTATATGCAACCACGTGCAGCTCCTCCTCCTTTCCACGTGTCAGTTTCACACGGTTGCGTGTTCCCAAACAGTAACAACAACAGCAACGGTATCAGCAGTAATAGTAACTGTAGCGGTGGTAACTATAGCATTGTAACTGGCACGGGCGCAGGGGTGTTACCGTACGGTGGAGGAGTAGAGGATTACTCTTCCACATTTTCAACTATGGGCTCGCAAGTACAAGGTCGGGCCCACTTTGGCAGGATTGATGGGCCTTCTAAAGGGGAAGTGGGACCCAGTTTCGATGATGGGTTTGGCTTGGACTTGCACCTTAGTTTAGCACCACCGTGA 753 0.5405 MEDQLHHHTNSTNPSSTTRLKLFGFNVHQLQETSDSTPKPTSPDSPGGVEGDTAGISTSSGDRKYECQYCCREFANSQALGGHQNAHKKERQQLKRAQLQATRNAAVSFARNPIISAFAPPPHLLAPPGSMMVPAGTPSWVYMQPRAAPPPFHVSVSHGCVFPNSNNNSNGISSNSNCSGGNYSIVTGTGAGVLPYGGGVEDYSSTFSTMGSQVQGRAHFGRIDGPSKGEVGPSFDDGFGLDLHLSLAPP 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0540 250 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Lal15g0540 250 SUPERFAMILY beta-beta-alpha zinc fingers 61 92 IPR036236 -
Lal15g0540 250 PANTHER ZINC FINGER PROTEIN 5 10 249 IPR044299 GO:0010090
Lal15g0540 250 MobiDBLite consensus disorder prediction 30 60 - -
Lal15g0540 250 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 92 IPR013087 -
Lal15g0540 250 PANTHER ZINC FINGER PROTEIN GIS3 10 249 - -
Lal15g0540 250 Gene3D Classic Zinc Finger 53 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0540 Lal-Chr15 3746251 3747003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0540 12 249 C2H2 Transcription Factor Family AT1G68360 45.627 1.38e-54 174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0612 16 3940944 3941756 Lal15g0540 15 3746251 3747003 LSH