Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0538 ATGGACGATGGCGGAAGCAGAGCCGAAGCTGAGCGATGGCTCTACACGGCGAACAAGCTTCTAAGCGCACGTGACTTGCACGGGGCCCGTTCCTTCGCGATCCGCGCCCGCGATTCCGACCTGACTTTCGACGCGTCGGAGCTTCTCCTGACGGTTATCGATACCGTCCTAGCCGGCGAGACTCGGATCAACGACCACCACTGCGACTGGTACGGGATCCTCCAGATCCACCGCTACACCACCAACATCGACCACATCGCCGCCCAGTACCGCCGTCTCGCCCTCTTACTTGACCCTAACCGCAACCCCTTCGCCTTCTCCGGCCACGCCTTCTCTCTCGTCCACGAAGCATGGTCCGTCCTCTCCAACCCAGTGAATAAGTCCATGTACGACAACGAGCTCCGGTTACTCACTTCCCATCCACCACCGCCACAACAACCACAACCTCCGTCTCCCCCGCCGCAACCAAAGAAAAACCCTAGATCTAAAAATGTTTCTACTGAACCGGTTCGAAAAGCTGGAACCATGACCGAGCCGAACGAGTTGACTCAGGTTGAGTCAGAGGAAGCGAGTTTTTGGACATCGTGTCCGTACTGTTACGTTATGTATGAGTACCCGAAGGTGTACGAGGAGTGTACCTTGCGGTGCCGTAGCTGTAGGAGAGGGTTTTACGCTGTAGTGATTCGATCGCCACCGTTGGATGGGTTAGTTGAAACCTTTTGCAGTTGGGGATTTTTACCGTTAGGGTTTTCCGGTGATTCAAAAGATGTTAATGGAGTTGGTTCTAATTGGAACCCGTTTTCGCCACATTTCCCTTGCCCCTTGATAGAGAACACGAAGAAGAAAAGGATCTCATTGAATGAGAATTCAGGTGGTGGTAGCACTGGTGGCGTGGTGATGGATGGTGGTGCAAATGCAAGCATCAATTTAAGCCTAGGAACTAGGCATCTTTTCCAAGCAACAACACAACCAAATTTGCTTAATCCAACATTGCTGCCACCTTTGCCTTCAATTCAAACATTGCCTCAGGGCAATAATGTTCCACAATTGCCTATAATCCCATCTCTGTCACAACCCATCACTCTACCACCATTTCCTAGTATCCCTACCATTCCAACAACACTTCCTACATTGCCTAACTTTCCCTCAATCCCCACCACTATCCCCTCCATTCCATTCTTCTCTCCACCACCTTCAACTACTACTAGCCCATAA 1215 0.5136 MDDGGSRAEAERWLYTANKLLSARDLHGARSFAIRARDSDLTFDASELLLTVIDTVLAGETRINDHHCDWYGILQIHRYTTNIDHIAAQYRRLALLLDPNRNPFAFSGHAFSLVHEAWSVLSNPVNKSMYDNELRLLTSHPPPPQQPQPPSPPPQPKKNPRSKNVSTEPVRKAGTMTEPNELTQVESEEASFWTSCPYCYVMYEYPKVYEECTLRCRSCRRGFYAVVIRSPPLDGLVETFCSWGFLPLGFSGDSKDVNGVGSNWNPFSPHFPCPLIENTKKKRISLNENSGGGSTGGVVMDGGANASINLSLGTRHLFQATTQPNLLNPTLLPPLPSIQTLPQGNNVPQLPIIPSLSQPITLPPFPSIPTIPTTLPTLPNFPSIPTTIPSIPFFSPPPSTTTSP 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0538 404 Gene3D DnaJ domain 56 140 IPR036869 -
Lal15g0538 404 Pfam DnaJ domain 69 131 IPR001623 -
Lal15g0538 404 SMART dnaj_3 68 126 IPR001623 -
Lal15g0538 404 SUPERFAMILY Chaperone J-domain 65 135 IPR036869 -
Lal15g0538 404 MobiDBLite consensus disorder prediction 135 184 - -
Lal15g0538 404 CDD DnaJ 69 123 IPR001623 -
Lal15g0538 404 ProSitePatterns Nt-dnaJ domain signature. 111 130 IPR018253 -
Lal15g0538 404 ProSiteProfiles dnaJ domain profile. 69 134 IPR001623 -
Lal15g0538 404 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 3 282 - -
Lal15g0538 404 MobiDBLite consensus disorder prediction 140 159 - -
Lal15g0538 404 PANTHER CHAPERONE DNAJ-DOMAIN PROTEIN 3 282 - -
Lal15g0538 404 MobiDBLite consensus disorder prediction 160 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0538 Lal-Chr15 3725515 3727550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0538 9 283 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 43.793 2.71e-71 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0538 - - lang:109332255 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0538 15 3725515 3727550 Lal23g1011 23 11970549 11971946 LSH
Lal15g0538 15 3725515 3727550 Lal5g1804 5 19938492 19940117 PCT
Lal15g0538 15 3725515 3727550 Lal3g0042 3 250125 251756 PCT
Lal5g1804 5 19938492 19940117 Lal15g0538 15 3725515 3727550 PCT
Lal3g0042 3 250125 251756 Lal15g0538 15 3725515 3727550 PCT