Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0523 ATGATCAATGACACCACTTTCACTAACGGTGGCCCCTCCAATACGCCGCCGTTTCACTTATCTGAGATCTGGCAATTCCCCCCTCCGCCTCTCATTGATTCCGGGATAGGGCCGAGAAGACCACCGTTCGAGCAAGGGTTAGCCCACTTCAGTGGTTTCGGTCCCAGCCGGGATAACGACCCCATTAATTCGGAGCATATGGCGCCAATTTCAATCAGGAAGAGGCGCGACTCTGATGAAGAATCAGTTAAGGCTGCTTCCACCAGTAATGGTGGTGGTGCCAATGTCATGAGTGATGGTGGTGATGGAAAACGGGTGAAAACTACTGGGAACACTAGAAATGAGAGTGGTAAACGTGAAAAAGAAACCAGTTCAGGAAAGCATGCGGAGCAACAACAAACAACTCCAGAGCCTCCTAAGCAAGATTACATACATGTGAGAGCTAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCAGAAAGAGACAATGAATCTGTTGATACTACTAGTTTCATTATGGAAATTTACAAAGCAATATGGAATTATTGGATCTTTTGTAATGAGTTCATGACTAAGTTTTGTAATGGAATATTGGTGGACCCTATTGGACAGGCTAGAAGAGAAAAGATCAGTGAAAGGATGAAAATTCTTCAGGATTTAGTTCCTGGTTGTAACAAGGTTATTGGGAAAGCACTTGTCCTTGATGAGATAATTAATTATATTCAATCACTTCAGCGCCAAGTAGAGTTCTTGTCAATGAAGCTTGAAGCAGTAAATTCAAGACTGGCCCCGGGCGTCGAAGCTTTTGCTCCTAAAGATGCATCTCGCAAATTCATGGTGGAATCTTCAATGGCTTCCTTCCTAGAAAAACAAGAAATGTTGTTTGATCAGCAGACATTTGATACAGCCGGCATGCCATTCACTTCACACGCTTCAAGAGATTATAGCCGGGGCTCATCACCCGAGTGGTTACATATGCAGGTAGGAGGTGGTTTTGAAAGAACAACATAG 1014 0.4428 MINDTTFTNGGPSNTPPFHLSEIWQFPPPPLIDSGIGPRRPPFEQGLAHFSGFGPSRDNDPINSEHMAPISIRKRRDSDEESVKAASTSNGGGANVMSDGGDGKRVKTTGNTRNESGKREKETSSGKHAEQQQTTPEPPKQDYIHVRARRGQATDSHSLAERDNESVDTTSFIMEIYKAIWNYWIFCNEFMTKFCNGILVDPIGQARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLAPGVEAFAPKDASRKFMVESSMASFLEKQEMLFDQQTFDTAGMPFTSHASRDYSRGSSPEWLHMQVGGGFERTT 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0523 337 Coils Coil 242 262 - -
Lal15g0523 337 PANTHER BNAC05G07950D PROTEIN 205 284 - -
Lal15g0523 337 PANTHER BNAC05G07950D PROTEIN 13 162 - -
Lal15g0523 337 PANTHER BNAC05G07950D PROTEIN 296 337 - -
Lal15g0523 337 MobiDBLite consensus disorder prediction 1 20 - -
Lal15g0523 337 SMART finulus 205 251 IPR011598 GO:0046983
Lal15g0523 337 MobiDBLite consensus disorder prediction 1 143 - -
Lal15g0523 337 MobiDBLite consensus disorder prediction 69 83 - -
Lal15g0523 337 CDD bHLH_AtBPE_like 142 270 - -
Lal15g0523 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 205 262 IPR036638 GO:0046983
Lal15g0523 337 Pfam Helix-loop-helix DNA-binding domain 206 246 IPR011598 GO:0046983
Lal15g0523 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 195 245 IPR011598 GO:0046983
Lal15g0523 337 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 205 284 IPR024097 GO:0006355
Lal15g0523 337 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 13 162 IPR024097 GO:0006355
Lal15g0523 337 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 296 337 IPR024097 GO:0006355
Lal15g0523 337 MobiDBLite consensus disorder prediction 106 127 - -
Lal15g0523 337 Gene3D - 202 266 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0523 Lal-Chr15 3624365 3629221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0523 17 300 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 44.674 8.41e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal15g0523 HLH 6.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0523 - - lang:109332242 455.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0523 15 3624365 3629221 Lal15g0523 15 3624365 3629221 ECH
Lal16g0583 16 3783490 3786498 Lal15g0523 15 3624365 3629221 LSH
Lal15g0523 15 3624365 3629221 Lal23g1025 23 12063198 12066183 LSH