Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0518 ATGAAGAGGTCTAGAGATGATGGTTTTATGAGTTCTCAACTCAAACGCCCCCTTCTGTATGGAGGAGAAGCGTCGGAACAACCCAAGGTGGTGAATGGAGGTGGTCAGAAGCTAACTGCTAATGATGCATTGGCATATCTCAAGTCAGTAAAGGATATGTTTCAAGATAAGAAGGACACCTATGATGAGTTTTTGGAAGTTATGAAAGATTTCAAGGCTCAAAGAACTAATACTGCAGGTGTCATAGCAAGAGTCAAGGAACTGTTTAAAGGGCATAGAGAGCTAATATTGGGATTTAATACCTTCTTGCCAAGGAGGTATGAAATCACACTTCCACTGGAGGATGATCAACCTCCTCCAAAGAAGCCTGTTGAATTTGAAGAAGCTATAAATTTTGTGAACAAGATTAAGACTCGGTTTCATGGTGATGATCGTGTTTATAGGTCTTTCCTAGACATATTAAATATGTACAGGAAGGAAAACAAGCCTATCACTGAGGTCTATCAGGAGGTTGCTGCACTTTTCCAAGGCCACTCTGATCTTCTTGATGGGTTTACTCATTTTCTTCCAGACACTTTTGAAGCTGCCTCTACTCGTCATGCTCCTGCTCGATATTCAATGCTTCGTGATAGGAGCCCTACAATTCTAACAATGCGGCAAATGCATGTGGACAAGAGAGAAAGGACCATGGCTTCACATTGTGATCGTGACCTTAGTGTTGACCGTCCTGACCTAGATCATGAGAAAGGTTTGGCGAAGGCAGAAAAGGATCAGAGGAGGCGTGTGGAGAAGGAAAATGACCGTAGAGAAGGGAGAGACTGGAGAGAAAGGGAAAGTGATGATAGAGATAATTGGCATTACCATAGTCGAGATAGGGAACAGTTCTCCCGCAAACAGAAATCTGATCATAGGGATGAAGACTCTGGAGCTGAACCATTGCTTGGTGCAAATGAAAATTTTGGTCTGCGCCCTATGCCATCTACCTTTGATGTGACAAATTCTCTGAAAAGTAAGTATAGTCAAGAACTTGCTTTCTGTGACAGAGTAAAAGACACATTACAAAATCCTGATGACTACCAGGAATTTTTGAAGTGTTTACATATTTATAGCAAGGAAATAATTACCCGACATGAGTTGCAGTCATTGGTAGGTGATTTACTGGGAAATTTTCCAGATCTTATGGAGGGTTTTAATGAGTTTTTGGTACAATCTGAAAAGAATGATGGTGGATTCCTAGCTGGTATCATGAATAAAAAGTCTATATGGAGTGAAGGACATGGACCAAAACCAAAGAAGGTCAAAGACAAGGATAGGGATCAAGACCGCTATAGGGTTGATGGGATGAAAGAAAGGGATCGAGAATGCCGGGAAAGGGATAAATCTACTGCTATTGCCAACAAGGATGTTTCAGGTTCTAAGACATCTCTATTTCCCAGCAAGGATAAGTATTTGTCAAAACCTATCAATGAGCTGGACTTTTCAAATTGTGACCAATGCACACCCAGTTACCGACTCTTGCCAAAAAATTACCCAATACCTCCAGCTAGCCAGAAAACAGAACTTGGTGCTGAAGTATTGAATGATCATTGGGTGTCTGTCACTTCCGGAAGTGAAGACTATTCTTTTAAACATATGCGCAAAAATCAGTATGAAGAGAGCTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAGTCTGTAAATGTGACAACTAAACAAGTAGAAGAGCTGTTGGACAAGATTAATAAAAATATAATTAAAGGAGACAGTCCAATCCGTATTGAGGAGCACTTAACAGCTTTAAATCTTAGGTGCATTGAACGGTTATATGGTGATCATGGGCTTGATGTGATGGATGTTTTAAGGAAGAATTCTCCTCTAGCTTTGCCAGTGATACTAACACGCTTGAAGCAGAAACAGGATGAGTGGGCAAGGTGTCGTGCTGATTTTAACAAAGTGTGGGCTGAAATATATGCTAAAAACTACCACAAATCTCTTGATCATCGTAGCTTCTACTTTAAGCAACAGGATACAAAAAGCCTAAGCACTAAAGCCTTACTGTCAGAAATCAAAGAAATCAGTGAGAAAAAACACAAAGAAGATGATGTTCTTCTTGCAATTTCTGCTGGAAACAGACGGTCTATTCTTCCAAACTTGGAGTTTGATTATCCTGATTCAGATATTCATGAAGATTTGTATCAGCTCGTAATGTATTCCTGTGGAGAAGTTTGTACAACTGAACAGTTGGATAAAGTTATGAAGATTTGGACAACATTTTTAGAGCCTGTGTTTTGTGTTCCTTCTCGGCCCTCAGGTGCCGAGGATACAGAAGATGTTGTCAAGGCTAAGAATAATTCTGTCAAAAGTGTGACTCCAAGTGTTGCCCAGAGTGATGATAATCCCGGTGTTGATGCTACTATAATGAATCCAAAGCATTTACACACATCTATAAATGGGGATGAGTGTATGCCATCAGATCAATCAAATTGTAGCAAAGCATGGCTGTCAAATGGTGATAGTGGGGCTAAAGAAGATAAGTGTCTTGCTTCAGACCGTATTGTGTGTAAAACTGAAACTTTTGGCAGTATTGTACAGCATGGTAAAATGAATTTTAGTGCATTTACTTATGATGAATCATCAGGAGCCAGTAAGCAAGACCCGTCCGATGAACAGTTAGTGAATGGTAAAGTCTTGTCGGCATCTGGAATGGAGCAAAGTAATGGAAGAACAAAAATAGATAATGCATTAGGACTCACTGCTACTACGTCTAGACCTTGTAATTTTGCTGTCAAGGGAGGACTTGATTTGCCTTCATCTGAGGGTGATGACTCTACAAGGCCAGGGACATCAAATGGGGCCACCACTGAAGGCAGCGAAGTTCACAGATACCAAGATGAATCAGTTCGACACTTCAAAAATGAAAGAGAAGAGGGCGAGTTATCTCCAAATGATGATTTTGAAGAGGATAACTTTAGAGTATATGAAAATGGTGGTTTGGATGCCGTGCATAAAGGAAATGATGGTGATGTGGCTCGGCAACCCCAAAATAGTCACGGGGAAGAAGTTTGTGGTGAAGCCAGAGGAGAAAACAATGCTGATGCTGATGATGAAGGTGAAGAAAGTCCTCACAGGTCATCAGAGGATAGTGAAAATGCTTCTGAAAATGTTGATGTTTCTGGAAGTGAGTCTGCTGATGGTGAGGAGTGTTCTCGAGGGGAGCACGGGGATGGGGAACATGATGAGAAGGCCGAGAGTGAAGGTGAAGCTGAAGGAGTGGCTGATGTCCATGATGTTGAAGGTGATGGAGCCTCATTGCCGTTTTCAGAACGCTTTCTGCTAACTGTAAAGCCTCTGGCAAAGCATGTTCCCATGCTGTTACATGAGAAAAAAAGGAATTCAGAAGTTTTTTATGGAAACAATTCCTTTTATGTGCTGTTTAGACTTCATCAGACATTGTATGAGAGGATTCGATCAGCAAAGTTTAACTCATCATCTGCTGAAAGGAAATGGAGGGCTTCAAATGATACTAGCTCCACTGATCAATATGACAGGTTCATGAATGCCCTTTACAGTTTACTGGATGGTTCTTCAGATAATACAAAATTTGAGGATGATTGCCGAGCGATTATTGGAACTCAATCATATCTCTTATTCACATTAGACAAGCTGATATATAAACTTGCTAAACAGCTCCAAGCTGTTGCCTCTGATGAGATGGACAGTAAGCTCCTCCAATTATATGCATATGAGAAATCAAGAAAACCTGGAAGATTTGTCGACATTGTTTATCATGAAAATGCCCGTGTTCTTCTTCATGATGAGAATATATATCGTATTGAATATTCACCAGGACCAATGCAATTGTCCATTCAACTGATGGACCATGGACTTGATAAGCCTGAAATGGCTGCTGTGTCGGTGGACCCGAGTTTTTCATCCTATCTGCACAATGATTTCCTCTCTGTTGTCCCTGACAAAAAGAAATCAAGAATTTTTTTGAGGAGGAATACACGTAGATATGCTTCTAGTGATGAATTTGCAAGTCAAGCTATGGAAGGACTACAAGTTATTAATGGTCTAGAGTGTAAGATAGCTTGCAATTCTTCTAAGGTGTCATATGTTTTAGATACAGAAGATTATTTGTATCGCATGAAAAAGAAAAGAAGAGCCTTGCATCCGAAGAGTTCATACCAAGAACAGACGAAGTCTTCAATTATTTGTGCAAGAAGAGAACAACGCTGTTACATTACAGCTTTGTTGACCTTATTGAATTATGAACATTTGATGGCTGCAATTGGCCTCCAGTTTCAAATACAAAGTGTATACTGA 4341 0.4024 MKRSRDDGFMSSQLKRPLLYGGEASEQPKVVNGGGQKLTANDALAYLKSVKDMFQDKKDTYDEFLEVMKDFKAQRTNTAGVIARVKELFKGHRELILGFNTFLPRRYEITLPLEDDQPPPKKPVEFEEAINFVNKIKTRFHGDDRVYRSFLDILNMYRKENKPITEVYQEVAALFQGHSDLLDGFTHFLPDTFEAASTRHAPARYSMLRDRSPTILTMRQMHVDKRERTMASHCDRDLSVDRPDLDHEKGLAKAEKDQRRRVEKENDRREGRDWRERESDDRDNWHYHSRDREQFSRKQKSDHRDEDSGAEPLLGANENFGLRPMPSTFDVTNSLKSKYSQELAFCDRVKDTLQNPDDYQEFLKCLHIYSKEIITRHELQSLVGDLLGNFPDLMEGFNEFLVQSEKNDGGFLAGIMNKKSIWSEGHGPKPKKVKDKDRDQDRYRVDGMKERDRECRERDKSTAIANKDVSGSKTSLFPSKDKYLSKPINELDFSNCDQCTPSYRLLPKNYPIPPASQKTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKQVEELLDKINKNIIKGDSPIRIEEHLTALNLRCIERLYGDHGLDVMDVLRKNSPLALPVILTRLKQKQDEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLSEIKEISEKKHKEDDVLLAISAGNRRSILPNLEFDYPDSDIHEDLYQLVMYSCGEVCTTEQLDKVMKIWTTFLEPVFCVPSRPSGAEDTEDVVKAKNNSVKSVTPSVAQSDDNPGVDATIMNPKHLHTSINGDECMPSDQSNCSKAWLSNGDSGAKEDKCLASDRIVCKTETFGSIVQHGKMNFSAFTYDESSGASKQDPSDEQLVNGKVLSASGMEQSNGRTKIDNALGLTATTSRPCNFAVKGGLDLPSSEGDDSTRPGTSNGATTEGSEVHRYQDESVRHFKNEREEGELSPNDDFEEDNFRVYENGGLDAVHKGNDGDVARQPQNSHGEEVCGEARGENNADADDEGEESPHRSSEDSENASENVDVSGSESADGEECSRGEHGDGEHDEKAESEGEAEGVADVHDVEGDGASLPFSERFLLTVKPLAKHVPMLLHEKKRNSEVFYGNNSFYVLFRLHQTLYERIRSAKFNSSSAERKWRASNDTSSTDQYDRFMNALYSLLDGSSDNTKFEDDCRAIIGTQSYLLFTLDKLIYKLAKQLQAVASDEMDSKLLQLYAYEKSRKPGRFVDIVYHENARVLLHDENIYRIEYSPGPMQLSIQLMDHGLDKPEMAAVSVDPSFSSYLHNDFLSVVPDKKKSRIFLRRNTRRYASSDEFASQAMEGLQVINGLECKIACNSSKVSYVLDTEDYLYRMKKKRRALHPKSSYQEQTKSSIICARREQRCYITALLTLLNYEHLMAAIGLQFQIQSVY 1446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0518 1446 MobiDBLite consensus disorder prediction 422 443 - -
Lal15g0518 1446 Gene3D Paired amphipathic helix 121 192 IPR036600 GO:0006355
Lal15g0518 1446 SUPERFAMILY PAH2 domain 118 191 IPR036600 GO:0006355
Lal15g0518 1446 MobiDBLite consensus disorder prediction 222 322 - -
Lal15g0518 1446 MobiDBLite consensus disorder prediction 1026 1055 - -
Lal15g0518 1446 SMART hdac_interact2seq4b 495 595 IPR013194 -
Lal15g0518 1446 Pfam C-terminal domain of Sin3a protein 1140 1385 IPR031693 -
Lal15g0518 1446 MobiDBLite consensus disorder prediction 946 962 - -
Lal15g0518 1446 MobiDBLite consensus disorder prediction 1068 1095 - -
Lal15g0518 1446 Gene3D Paired amphipathic helix 42 104 IPR036600 GO:0006355
Lal15g0518 1446 Gene3D Paired amphipathic helix 332 405 IPR036600 GO:0006355
Lal15g0518 1446 PANTHER SIN3B-RELATED 1 473 IPR039774 GO:0003714
Lal15g0518 1446 PANTHER SIN3B-RELATED 476 1395 IPR039774 GO:0003714
Lal15g0518 1446 ProSiteProfiles PAH domain profile. 36 106 IPR003822 GO:0006355
Lal15g0518 1446 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 476 1395 - -
Lal15g0518 1446 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 473 - -
Lal15g0518 1446 ProSiteProfiles PAH domain profile. 122 192 IPR003822 GO:0006355
Lal15g0518 1446 MobiDBLite consensus disorder prediction 222 311 - -
Lal15g0518 1446 SUPERFAMILY PAH2 domain 334 401 IPR036600 GO:0006355
Lal15g0518 1446 MobiDBLite consensus disorder prediction 933 1095 - -
Lal15g0518 1446 Pfam Paired amphipathic helix repeat 59 103 IPR003822 GO:0006355
Lal15g0518 1446 Pfam Paired amphipathic helix repeat 146 189 IPR003822 GO:0006355
Lal15g0518 1446 Pfam Paired amphipathic helix repeat 357 401 IPR003822 GO:0006355
Lal15g0518 1446 ProSiteProfiles PAH domain profile. 335 404 IPR003822 GO:0006355
Lal15g0518 1446 MobiDBLite consensus disorder prediction 424 443 - -
Lal15g0518 1446 MobiDBLite consensus disorder prediction 963 998 - -
Lal15g0518 1446 Pfam Sin3 family co-repressor 498 588 IPR013194 -
Lal15g0518 1446 SUPERFAMILY PAH2 domain 36 104 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0518 Lal-Chr15 3578384 3591471 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0518 25 137 WRKY Transcription Factor Family AT4G12020 46.957 1.98e-22 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal15g0518 Sin3a_C 3e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0518 K11644 - gmx:100811928 2156.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0518 15 3578384 3591471 Lal15g0518 15 3578384 3591471 ECH
Lal16g0576 16 3716964 3746240 Lal15g0518 15 3578384 3591471 LSH