Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0517 ATGTTACCGGCAAAAGAAGAGATGAAAAGGTCTAGAGATGATGGTTTCATGAATTCTCAACTCAAACGTCCCCTTCTATCTAGAGGAGAAGCGTCTGGGCAACCCCAGATGGTGAATGGAGGTGGTCAGAAACTAACTACTAATGATGCGTTAGCATATCTCAAGGCAGTAAAGGACATGTTTCAAGATAAGAAGGACACATATGATGAATTTTTGGAAGTCATGAAAGATTTCAAGGCTCAAAGACTTGATACTACGGGTGTCATAGCAAGAGTCAAGGAGCTGTTTAAAGGGCATAGAGAGCTAATATTGGGATTTAATACCTTCTTGCCAAAGGGATATGAAATCACACTTCCACTGGATGATGAGCAACCTCCCCAAAAGAAGCCTGTTGAATTCGAAGAAGCTATAAATTTTGTGAACAGGATTAAGACTCGGTTTCAAGGTGATGATCGTGTTTACAAGTCATTTCTAGACATATTGAATATGTACAGAAAGGAAAACAAGACTATCACTGAGGTCTACCAGGAGGTTGCTGCACTTTTCCAAGACCACCATGACCTTCTTGATGAGTTTACTCATTTTCTTCCAGACACTTCTGCAGCTGCCTCTACTCATTATGTTACTGCTCGGAATTCTATGCTTCGTGACAGGAGCTCTGCAGTGCCAACTGTACGGCAAATGCATGCTGACAAGAGGGAAAGGATCATGGCTTCACATGGTGATCTTGGTCTCAGTGTTGACCGTCCTGACCCAGATCATGACAGAGGATTGATGAGGAGACATATGGAAAAAGAAAAAGACCATAGAGAAGAGAGAGACAGGAGAGAACGGGAAAGGGATGATAAAGATTATGAGCATGATGGCGGTCGGGATAGAGGGCGGTTCTCTCACAAATGGAAATCTGATCATAGAGCTGAAGACTCTGGAGCAGAACCATTGCTTGATACAGATGAAAATATCGGTATGCGCCCTATGTCATCTACTTGTGATGATAAAAATTCTCTGAAAATTAAGTATAGTCAGGAGCTGGCATTCTGTGAAAAGGTCAAAGAGAAATTACGAAATCCTGACAACTACCAGGAATTTTTGAAGTGTCTGCATATTTACAGCAAGGAAATAATTACCCTACATGAATTGAAGTCATTGGTGGGTGATTTACTTGGAAAATATCCAGATCTTGTGGAGGGATTTAATGATTTTTTGGTACAATCTGAAAAGAATGATGGTGGATTTCTTGCTGGTGTCATGAATAAAAAGTCCTTATGGTGCGAAGGACAGGGACCAAAACCAATGAAGGTTGAAGACAGGGATAGAGATCGAGATCGTTATAGGGATGATGGGGTGAAGGAAAGGGACCGTGAATGCCGAGAAAGGGATAAATCTACTGCAATTTCCAACAAGGATGTTTCAGGTCCTAGGATGTCTCTATATTCCAGCAAGGATAAGTATTGGTCAAAACCTATAAATGAGCTGGACCTTTCTAACTGTGAACAATGCACTCCCAGTTATCGTCTCCTACCTAAAAATTACCCAATACCTTTAGCTAGCCAGAGAACAGAACTTGGTGCAGAAGTATTGAATGATCACTGGGTGTCTGTCACTTCCGGAAGTGAGGATTATTCCTTTAAACATATGCGCAAAAATCAGTATGAGGAGAGCTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGATATGCTGTTAGAGTCTGTAAATGTGACTACTAAGCGGGTAGAAGAGCTGTTAGAAAAGATCAATAGAAATATAATTAAAGGTGATAGTCCAATTCGTATCGAGGAACACTTAACAGCCCTAAATCTTAGGTGCATTGAACGATTGTATGGTGACCATGGACTTGATGTAATGGATGTATTAAGGAAGAATGCACCTCTAGCTTTGCCAGTGATATTAACACGCTTGAAGCAGAAACAGGATGAGTGGGCAAGGTGTCGTGCTGATTTCAATAAAGTTTGGGCTGAAATATATGCTAAGAACTATCATAAATCCCTGGATCATCGCAGCTTCTACTTTAAGCAACAGGATACAAAAAGCTTGAGCACTAAAGCCTTACTGTCAGAAATCAAAGAAATTAGTGAGAAGAAGCACAAGGAAGATGACGTTCTTCTTGCAATTGCTGCTGGAAATAGACGGCCTATTCTTCCAAACTTGGAGTTTGAGTATCCTGATCCAGGTATTCATGAAGATTTGTATCAGCTGATAAAATATTCCTGTGGAGAAGTTTGTACAACTGAACAGTTGGATAAAGTTATGAAGATTTGGACAACGTTCTTAGAACCCATGCTTTGTGTTCCTTCTCGACCTGTGGGTACGGAGGATACAGAAGATGCTGTCAATGCTACCAATTGTTCTGTCAAAAGTGGGACCACATGTGTTAACAGGAGGGATGGTAGCCCTGGTGTTGTTGCTAGTGCAATGAGTCCAAAGCATTTGAATACATCTGGAAATGGGGATGGCTGTATGCCCTTAGACCAGTCAAATTCTATTAAAGTTTGGCAGTCAAATGGTGATAGTGGGGTTAAAGAAGATGAGTATCTTGATTCAGACCGTAGTGTGCGTAAAACTGAAACTTTAGGCAGTAATATGCTGAATGACAAAGTGAACATTAGTGCATTCGCTCCTGATGAATTATCCGGAGTCCAGAAGCAAGATAACTCCGGTGAACTCTTAGTGAATACTAATGTCTCACCAGCATCTGGAATGGAGCAATGCAATGGAAGAAAAAACATAGACAATGCATCAGGACCTGCTGCTATCCCATCTAGAACTGGTAATGTTACTGTCGAGGGAGTACATGATTTACCTTCATCAGAGGGTGGTGATTCTACAAGACCAGGTACATCCACAAATGGGGCCATCAATGAAGGGACCCAAGTTAACAGATACCAAGAAGGATCAGTTCAACACTTCAGTGGTGAAAGAGAAGAAGGTGAGTTATCTCCAAATGGAGATTTTGAAGAGGATAACTTGGGAGTTTACCGAGATGGTGATTTGGACATAGTGCATAAAGCAAAGAATGGTGGTGTGAGTCGGCAATACCAAAATAGACATGGGAAAGAAGTTTTTGGTGAAGTCAGAGGGGAAAATGATGTCGATGCTGATGATGAAGGTGAAGGTGAAGAAAGTCCTCACAGATCATCAGAAGATAGTGAAAATGTTGATGTTTCTGGAAGCGAGTCTGCTGACGGTGTGGAGTGTTCTCGAGAGGAGCACGAGGATGGGGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGCTGAAGGTATGGCTGACGCCCATGATGTTGAAGGAGATGGAACCTCATTGCCATTTTCAGAATGCTTTCTGCTAACCGTAAAGCCTCTGGCAAAGCATGTTCCCCTAGTGTTACATGAGAAAGAAAGGAATTCACAAGTATTTTATGGAAATGATTCCTTTTATGTGCTGTTTAGACTTCATCAGACATTGTATGAAAGGATACAATCAGCAAAGATTAACTCGTCATCTGCTGAAAGAAAATGGAGGGCTTCAAATGAGACAAGCTCTACTGATCAATATGACAGGTTCATGAATGCCCTTTACAATCTACTGGATGGTTCTTCCGATAATGCTAAATTTGAGGACGAATGTCGAGCTATTATTGGAACTCAATCATATCTCTTATTTACATTAGACAAGCTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCCACTGATGAGATGGATAATAAGCTGCTTCAACTATATGCATATGAGAAATCAAGAAAACCTGGAAGATTTGTTGATGTTGTTTATCATGACAATGCCCGTGTTCTTCTTCATGATGAGAACATATATCGTATTGAATATTCACCTGGACCAATGCAAATGTCTATTCAACTGATGGACCATGGACATGATAAGCTGGAAGTAACTGCTGTGTCTGTGGACCCTAATTTTTCAGCCTATTTGCACAATAACTTCCTCTCTATTGTTCCTGACAATAAGGAGAAGTCGGGAATTTTTTTGAAGAGGAATAAACGTAGATATGCCTACGATGATGAATTTTCAAGCCAGGTTATGGAAGAACTAAAAGTTGTGAATGGTCTGGAGTGTAAGATAGCCTGCAGTTCATCTAAGGTTTCATATGTATTAGATACCGAAGACTTTTTGGTTCGGATGAGAAGGAAAAGAAGAGCCTTGCATCTGAAGAGTTCATGCCATGAACAAGCAAAGTCTTCAAGCATTTTTTCAAGAAGGGTACAACGTCTCCGCAGATTGTTTTCCAGTCCATGA 4281 0.4076 MLPAKEEMKRSRDDGFMNSQLKRPLLSRGEASGQPQMVNGGGQKLTTNDALAYLKAVKDMFQDKKDTYDEFLEVMKDFKAQRLDTTGVIARVKELFKGHRELILGFNTFLPKGYEITLPLDDEQPPQKKPVEFEEAINFVNRIKTRFQGDDRVYKSFLDILNMYRKENKTITEVYQEVAALFQDHHDLLDEFTHFLPDTSAAASTHYVTARNSMLRDRSSAVPTVRQMHADKRERIMASHGDLGLSVDRPDPDHDRGLMRRHMEKEKDHREERDRRERERDDKDYEHDGGRDRGRFSHKWKSDHRAEDSGAEPLLDTDENIGMRPMSSTCDDKNSLKIKYSQELAFCEKVKEKLRNPDNYQEFLKCLHIYSKEIITLHELKSLVGDLLGKYPDLVEGFNDFLVQSEKNDGGFLAGVMNKKSLWCEGQGPKPMKVEDRDRDRDRYRDDGVKERDRECRERDKSTAISNKDVSGPRMSLYSSKDKYWSKPINELDLSNCEQCTPSYRLLPKNYPIPLASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKINRNIIKGDSPIRIEEHLTALNLRCIERLYGDHGLDVMDVLRKNAPLALPVILTRLKQKQDEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLSEIKEISEKKHKEDDVLLAIAAGNRRPILPNLEFEYPDPGIHEDLYQLIKYSCGEVCTTEQLDKVMKIWTTFLEPMLCVPSRPVGTEDTEDAVNATNCSVKSGTTCVNRRDGSPGVVASAMSPKHLNTSGNGDGCMPLDQSNSIKVWQSNGDSGVKEDEYLDSDRSVRKTETLGSNMLNDKVNISAFAPDELSGVQKQDNSGELLVNTNVSPASGMEQCNGRKNIDNASGPAAIPSRTGNVTVEGVHDLPSSEGGDSTRPGTSTNGAINEGTQVNRYQEGSVQHFSGEREEGELSPNGDFEEDNLGVYRDGDLDIVHKAKNGGVSRQYQNRHGKEVFGEVRGENDVDADDEGEGEESPHRSSEDSENVDVSGSESADGVECSREEHEDGEHDNKAESEGEAEGMADAHDVEGDGTSLPFSECFLLTVKPLAKHVPLVLHEKERNSQVFYGNDSFYVLFRLHQTLYERIQSAKINSSSAERKWRASNETSSTDQYDRFMNALYNLLDGSSDNAKFEDECRAIIGTQSYLLFTLDKLIYKLVKQLQAVATDEMDNKLLQLYAYEKSRKPGRFVDVVYHDNARVLLHDENIYRIEYSPGPMQMSIQLMDHGHDKLEVTAVSVDPNFSAYLHNNFLSIVPDNKEKSGIFLKRNKRRYAYDDEFSSQVMEELKVVNGLECKIACSSSKVSYVLDTEDFLVRMRRKRRALHLKSSCHEQAKSSSIFSRRVQRLRRLFSSP 1426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0517 1426 MobiDBLite consensus disorder prediction 246 312 - -
Lal15g0517 1426 MobiDBLite consensus disorder prediction 428 472 - -
Lal15g0517 1426 Pfam Paired amphipathic helix repeat 66 110 IPR003822 GO:0006355
Lal15g0517 1426 Pfam Paired amphipathic helix repeat 153 196 IPR003822 GO:0006355
Lal15g0517 1426 Pfam Paired amphipathic helix repeat 358 402 IPR003822 GO:0006355
Lal15g0517 1426 Gene3D Paired amphipathic helix 127 200 IPR036600 GO:0006355
Lal15g0517 1426 MobiDBLite consensus disorder prediction 238 328 - -
Lal15g0517 1426 Pfam Sin3 family co-repressor 498 589 IPR013194 -
Lal15g0517 1426 Gene3D Paired amphipathic helix 49 111 IPR036600 GO:0006355
Lal15g0517 1426 SMART hdac_interact2seq4b 496 596 IPR013194 -
Lal15g0517 1426 ProSiteProfiles PAH domain profile. 43 113 IPR003822 GO:0006355
Lal15g0517 1426 SUPERFAMILY PAH2 domain 43 112 IPR036600 GO:0006355
Lal15g0517 1426 MobiDBLite consensus disorder prediction 940 998 - -
Lal15g0517 1426 MobiDBLite consensus disorder prediction 1 17 - -
Lal15g0517 1426 SUPERFAMILY PAH2 domain 125 198 IPR036600 GO:0006355
Lal15g0517 1426 MobiDBLite consensus disorder prediction 1 20 - -
Lal15g0517 1426 ProSiteProfiles PAH domain profile. 336 405 IPR003822 GO:0006355
Lal15g0517 1426 MobiDBLite consensus disorder prediction 947 974 - -
Lal15g0517 1426 ProSiteProfiles PAH domain profile. 129 199 IPR003822 GO:0006355
Lal15g0517 1426 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 8 1403 - -
Lal15g0517 1426 SUPERFAMILY PAH2 domain 334 402 IPR036600 GO:0006355
Lal15g0517 1426 Coils Coil 259 279 - -
Lal15g0517 1426 MobiDBLite consensus disorder prediction 1070 1101 - -
Lal15g0517 1426 Gene3D Paired amphipathic helix 334 406 IPR036600 GO:0006355
Lal15g0517 1426 Pfam C-terminal domain of Sin3a protein 1140 1386 IPR031693 -
Lal15g0517 1426 MobiDBLite consensus disorder prediction 1016 1104 - -
Lal15g0517 1426 MobiDBLite consensus disorder prediction 1045 1059 - -
Lal15g0517 1426 PANTHER SIN3B-RELATED 8 1403 IPR039774 GO:0003714
Lal15g0517 1426 MobiDBLite consensus disorder prediction 430 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0517 Lal-Chr15 3564880 3575924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0517 9 125 WRKY Transcription Factor Family AT4G12020 46.218 4.70e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal15g0517 Sin3a_C 1.7e-59 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0517 K11644 - gmx:100811928 2213.34