Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0480 ATGATGATGATTGATTATGAATGCCCAACTTCAACTATAAATGCTCCCTTGTGTCAAATGAGCTACAACCTCAGTCTCTCTCTCACTCTCTATCTTTCTTTTTCTCTCTCTCACATATCCAACCTCTCCTACAGATTCAGGCACACTCCCATGTCAACACTAAACCATCTTTTTGATCTTCCAGAACAGATATGTTATATACAATGTGGATTCTGTACCACAATTTTGATGGTAAGTGTTCCATGCAGTAGTATGTCAATGGTAGTTACAGTGAGATGTGGGCACTGCACAAGCCTCCTTTCTGTTAACATGATGAAAGCTTCTTTTGTCCCTTTACACCTTTTAGCATCACTTAGTAATCTTGAGCCAAAAGAAGATAGTCCAGAAGGGGATATGAACAAGACTTTGAACAGCTCTAATGCTTCCATGATGACTTATTCTGATTGTGAGGAAGAGGATGTGATTCCAATTAACAATGTTGTGAATAAACCCCCAGAAAAGAGACAAAGAACACCATCAGCTTATAACCGCTTCATCAAGGAAGAGATCAAAAGGCTAAAGGCTGAACACCCTAATATGGTACACAAGGAAGCTTTCAGTACAGCTGCAAAGAATTGGGCTAATTCCCCTCCAACTCAATGCAAAGGGGATGAAGAAAGTTGTAGTCAGACAGAGCCACTTTTGGATGTAGACTCCCATTTGGACCCTAATGATGCTGAGGTGAATGAAGAAGGTCAAGGTTTTCGGGGAAGAAAGGTTCCAAGGAATTCCATCTTGGGAAGGATGCCATTCAATTGA 798 0.4073 MMMIDYECPTSTINAPLCQMSYNLSLSLTLYLSFSLSHISNLSYRFRHTPMSTLNHLFDLPEQICYIQCGFCTTILMVSVPCSSMSMVVTVRCGHCTSLLSVNMMKASFVPLHLLASLSNLEPKEDSPEGDMNKTLNSSNASMMTYSDCEEEDVIPINNVVNKPPEKRQRTPSAYNRFIKEEIKRLKAEHPNMVHKEAFSTAAKNWANSPPTQCKGDEESCSQTEPLLDVDSHLDPNDAEVNEEGQGFRGRKVPRNSILGRMPFN 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0480 265 SUPERFAMILY HMG-box 159 212 IPR036910 -
Lal15g0480 265 MobiDBLite consensus disorder prediction 208 265 - -
Lal15g0480 265 Pfam YABBY protein 61 213 IPR006780 GO:0007275
Lal15g0480 265 PANTHER PROTEIN YABBY 6-RELATED 51 225 IPR006780 GO:0007275
Lal15g0480 265 Gene3D High mobility group box domain 160 219 IPR036910 -
Lal15g0480 265 MobiDBLite consensus disorder prediction 231 250 - -
Lal15g0480 265 PANTHER AXIAL REGULATOR YABBY 4 51 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0480 Lal-Chr15 3290109 3292346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0480 26 264 C2C2-YABBY Transcription Factor Family AT1G23420 53.846 1.26e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lal15g0480 YABBY 9.6e-60 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0480 K25796 - gmx:100806755 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0480 15 3290109 3292346 Lal15g0480 15 3290109 3292346 ECH
Lal16g0533 16 3410584 3413336 Lal15g0480 15 3290109 3292346 LSH