Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0475 ATGGAAGAAATGTACGGAGTGCCGTCGTTTACGACGGCGGGTTACTCTGGGAAGCACTTGATGACGCCGGAAAATCTGATGTTTCCGCCGGACTACCACAGCTTCCTCATGTCTTCCTCCTCCTCCACCCGAATTCCCATGTTCGGATCCGAGGATCTTCTCTCCGCCGCCGAACCCTCCTCCACTGGAATTCAACAGCATCAACAGGAACAAAACCAGCATGAAGTCCACACCTCGACGGTGATGAAAGCAAAAATCGCTTCTCATCCTCACTATCCTCGCCTTCTCCAAGCTTACATTGATTGCCAAAAGGTAGGAGCACCTCATGAAATAGCAGTGTTGTTAGAAGAAATCCGGCAAGAAAACAACCTATGTTGTAAGAAAGACCTTGTTTCCACGTGCTTTGGATCTGATCCCGAGCTTGACAATTTCATGGAAAACTACTGTAACATGCTGGTGAAGTATAAATCAGACCTGGCTCAACCTTTTGATGAAGCAACTAGCTTCCTTAACAACATGGAAATGCAGCTTAGTCATCTCTGTACTGGTGGTGCTAATTCATTTCCAACTCTTAACTCTGATGATGGAGGTGTATCTTCAGACGAAGATTTTAGTATCGCAGAGGGTGATGTTCAAGATGGTCAACTAGGGTGTGAAGATCGTGAGTTAAAGGATAAGCTTTTACGTAAATTTGGGACTCATATTAGCACTTTGAAATTGGAGTTTTCTAAAAAGAAAAAGAAGGGCAAACTACCAAAGGAAGCAAAACAAACATTGCTTCAATGGTGGAATCTTCACTATAAATGGCCTTACCCAACGGAAGCTGATAAGATTGAACTGGGTAAGACAACGGGGCTAGACCCGAAGCAAATAAATAATTGGTTTATTAATCAAAGAAAACGTCATTGGAAACCATCTGAAAATATGCAGTTTTCTATGATGGAAACTATTTAA 954 0.4277 MEEMYGVPSFTTAGYSGKHLMTPENLMFPPDYHSFLMSSSSSTRIPMFGSEDLLSAAEPSSTGIQQHQQEQNQHEVHTSTVMKAKIASHPHYPRLLQAYIDCQKVGAPHEIAVLLEEIRQENNLCCKKDLVSTCFGSDPELDNFMENYCNMLVKYKSDLAQPFDEATSFLNNMEMQLSHLCTGGANSFPTLNSDDGGVSSDEDFSIAEGDVQDGQLGCEDRELKDKLLRKFGTHISTLKLEFSKKKKKGKLPKEAKQTLLQWWNLHYKWPYPTEADKIELGKTTGLDPKQINNWFINQRKRHWKPSENMQFSMMETI 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0475 317 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 317 - -
Lal15g0475 317 SUPERFAMILY Homeodomain-like 243 313 IPR009057 -
Lal15g0475 317 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 1 317 - -
Lal15g0475 317 Gene3D - 241 314 - -
Lal15g0475 317 ProSiteProfiles ELK domain profile. 222 242 IPR005539 GO:0003677
Lal15g0475 317 Pfam KNOX1 domain 82 122 IPR005540 GO:0003677|GO:0005634
Lal15g0475 317 Pfam Homeobox KN domain 262 301 IPR008422 GO:0003677|GO:0006355
Lal15g0475 317 ProSiteProfiles 'Homeobox' domain profile. 242 305 IPR001356 GO:0003677
Lal15g0475 317 SMART KNOX2_2 131 182 IPR005541 GO:0003677|GO:0005634
Lal15g0475 317 SMART ELK_2 222 243 IPR005539 GO:0003677
Lal15g0475 317 SMART KNOX1_2 80 124 IPR005540 GO:0003677|GO:0005634
Lal15g0475 317 SMART HOX_1 244 309 IPR001356 GO:0003677
Lal15g0475 317 CDD homeodomain 254 306 IPR001356 GO:0003677
Lal15g0475 317 Pfam ELK domain 222 243 IPR005539 GO:0003677
Lal15g0475 317 Pfam KNOX2 domain 135 181 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0475 Lal-Chr15 3234291 3243148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0475 4 315 Homeobox Transcription Factor Family AT1G23380 60.923 2.93e-129 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lal15g0475 KNOX2 1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0475 - - gmx:100794719 445.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0475 15 3234291 3243148 Lal15g0475 15 3234291 3243148 ECH
Lal16g0526 16 3343137 3353735 Lal15g0475 15 3234291 3243148 LSH