Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0459 ATGGAGGAAGCACTGAGGTTTCTCAATGGCATGCCCTCAATTCCAGAACCCGACCTTCAAGACACCATCACCACCACCGACAACCACCGCATCAAGAAGTCCTCCGCTGCCAACAAGAGGGCGTTGCGAGAGAACAGTTCTTCTGCCGCTTCTTCCTCCGGCGGCGCCATGAGGTACCGCGGAGTCAGGCGCAGGCCGTGGGGTCGTTACGCAGCAGAGATTAGAGACCCTCAGTCGAAGGAGCGCCGCTGGCTAGGCACCTTCGACACGGCGGAGGAAGCGGCCTGTGCCTATGACTGCGCCGCCCGTGCCATGCGTGGCTTTAAGGCTCGAACTAACTTTGTTTACCCAGCTTCACCACCTTCTCCCGCCACCGAATTTTGTCCCTTTAATTTCCCGAAATACCCTTACCCGCAACAACAGCAACAACAACACTTGAGCAAAATTTCACCATGTTCTGCTTCAACTACCCAACAACAGCGAAACCCTTCTTCTTCTCTTAACATGCTTCTCTTTCGTGACTTGCTCAACTCTTCCTCTGCTCATCATTTTCACAACTACAACAACAATGTAACTTCTTCTTCAACCCCATTTGTTAACACTTATGCAAATACCATCAGTGTAAATGCTAATAACAGCACTTGCGGGGTTGTTGAAAACTGTTATGATAACAAAGCTGCTGTAGCTGATGATGAAAATGACGACTTGGAAATTTCCGACTCTGGATTATTAGAAGATATAGTTCATAAGTTCTTGCCAAAATCCAAGGCTAAAAAAATTGAGACTCCTGAGAAAATTACTGATACTAATTTCCGCAACCCAGCTTGTTCTGATAATATGTTCCTTCCCAATACTCAGTGCTATGAAGAGATGACGAGGGAGATTCCCATGAACAATGATTTTGGTGGGGTTTCTTCTTTTGAATATCGCCAAGGTTTTCCCATGCAGCAATTTGGAACATTCAACAATGGGTTTAATGTTAATGCCGTTCATTCTGTACCTCCTCTTGGTAATGACCAAGTCATGATGAATCATACAGAATACTCTACTACAATCATGGAAGATGTTTTTCAGTATCCAGAATTTCTCAATTCTTTTGCACTCAGGATGCAAAATGCTTAG 1122 0.4545 MEEALRFLNGMPSIPEPDLQDTITTTDNHRIKKSSAANKRALRENSSSAASSSGGAMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGFKARTNFVYPASPPSPATEFCPFNFPKYPYPQQQQQQHLSKISPCSASTTQQQRNPSSSLNMLLFRDLLNSSSAHHFHNYNNNVTSSSTPFVNTYANTISVNANNSTCGVVENCYDNKAAVADDENDDLEISDSGLLEDIVHKFLPKSKAKKIETPEKITDTNFRNPACSDNMFLPNTQCYEEMTREIPMNNDFGGVSSFEYRQGFPMQQFGTFNNGFNVNAVHSVPPLGNDQVMMNHTEYSTTIMEDVFQYPEFLNSFALRMQNA 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0459 373 MobiDBLite consensus disorder prediction 139 164 - -
Lal15g0459 373 SUPERFAMILY DNA-binding domain 58 115 IPR016177 GO:0003677
Lal15g0459 373 Gene3D AP2/ERF domain 57 116 IPR036955 GO:0003700|GO:0006355
Lal15g0459 373 MobiDBLite consensus disorder prediction 27 57 - -
Lal15g0459 373 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700|GO:0006355
Lal15g0459 373 Pfam AP2 domain 58 107 IPR001471 GO:0003700|GO:0006355
Lal15g0459 373 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 229 - -
Lal15g0459 373 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 237 373 - -
Lal15g0459 373 SMART rav1_2 58 121 IPR001471 GO:0003700|GO:0006355
Lal15g0459 373 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Lal15g0459 373 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Lal15g0459 373 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 237 373 - -
Lal15g0459 373 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 1 229 - -
Lal15g0459 373 MobiDBLite consensus disorder prediction 40 54 - -
Lal15g0459 373 CDD AP2 58 114 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0459 Lal-Chr15 3119327 3120448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0459 39 265 AP2-EREBP Transcription Factor Family AT1G24590 40.476 1.14e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal15g0459 AP2 7.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0459 - - lang:109332560 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0514 16 3266814 3267930 Lal15g0459 15 3119327 3120448 LSH
Lal15g0459 15 3119327 3120448 Lal23g1071 23 12415121 12416203 LSH