Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0453 ATGGAATTCGAAGATAAAGAGGAGCAGGAAGAAGAGCTATGTTTTGACCCAATGGGAAACTCAACCCGAGTTAAAATACCCGGTTCAGTTGAACCCATCATGATGTCTCAACCTGTTAGGAGCAGCACCAACAAGGCAAGGTACAGGGAGTGTTTGAAGAACCACGCCGTTGGTATCGGCGGCCACGCTCTTGACGGCTGCTGCGAGTTCATGCCTGCCGGAACAGAAGGAACCCTCGACGCACTCAAATGTGCCGCCTGCAACTGCCACCGCAACTTCCACCGCAAGGAATCCGACAACGCCGCCATCGTTACAGGTTCAGAGCCATTTCTCCTAACTCACCACTCTCACCCTCACCACCACCAGCCACCACCGCATTTCGCGGCGTACTACCGTTCCCCGGCTGGGTACCTTCACGTGTCGGGTGGAGGCCATCACCAGAGAGGAGCTGCGCCTGCTGGGACGCTGGCTCTGCCGTCGACCTCCGGTGCCGGAGGAGGAGGTGCGGAGACCCAGAACACGAAGGAGGATCAAGAAGACATGTCGAACCTGATGAGCTATGGAGATGGAAGTGGAGGGTCGAAGAAGAGGCACAGAACAAAGTTCAGTCAAGAGCAGAAAGACAAGATGCTTGAACTTGCAGAGAAGCTAGGTTGGAGGATTCAGAAGCATGATGAGAATGTGATCCAGGAGTTCTGTAACGAAACTGGGGTCAAGCGTCACGTTCTTAAGGTTTGGATGCATAACAACAAGCACACTCTTGGTAAGAAGCCCTAG 777 0.538 MEFEDKEEQEEELCFDPMGNSTRVKIPGSVEPIMMSQPVRSSTNKARYRECLKNHAVGIGGHALDGCCEFMPAGTEGTLDALKCAACNCHRNFHRKESDNAAIVTGSEPFLLTHHSHPHHHQPPPHFAAYYRSPAGYLHVSGGGHHQRGAAPAGTLALPSTSGAGGGGAETQNTKEDQEDMSNLMSYGDGSGGSKKRHRTKFSQEQKDKMLELAEKLGWRIQKHDENVIQEFCNETGVKRHVLKVWMHNNKHTLGKKP 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0453 258 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 195 251 IPR006455 -
Lal15g0453 258 MobiDBLite consensus disorder prediction 165 189 - -
Lal15g0453 258 MobiDBLite consensus disorder prediction 143 204 - -
Lal15g0453 258 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 47 97 IPR006456 -
Lal15g0453 258 Gene3D - 183 255 - -
Lal15g0453 258 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 48 97 IPR006456 -
Lal15g0453 258 Pfam ZF-HD protein dimerisation region 46 98 IPR006456 -
Lal15g0453 258 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 36 257 - -
Lal15g0453 258 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 36 257 - -
Lal15g0453 258 SUPERFAMILY Homeodomain-like 181 256 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0453 Lal-Chr15 3066278 3067054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0453 1 254 ZF-HD Transcription Factor Family AT4G24660 46.275 4.66e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lal15g0453 ZF-HD_dimer 6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0453 - - gmx:100808910 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0508 16 3211431 3212195 Lal15g0453 15 3066278 3067054 LSH
Lal15g0453 15 3066278 3067054 Lal23g1077 23 12445632 12446384 LSH