Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0449 ATGGAGGGGTCGACGCCATTTTCTTTCACTTACGAAGTTTTCTCTCCCCCATTAGATGAACGGGATGTAGCATTCCAACAATCCCTCGCAGAAGTTCTTAATGTAGATTTTTTCTCCATCAAGATTCATGTTACGTATCGAATTATCTGTTTAACTCGTGAACAACTACGACAATTACCAGAAGAAATAGATTACTATGAGTCTTCATATGACAGCAACATGCTTCTTTCATACCGAGAGGTATTGGAAAGTGATTTGTTCATGGACATTCCTGACACTATCGTTCCACCTGAGTTGAACGAAATAGTGATGCCAGAAGTGATGAGACACGCTAGAAATTTATATGAAAGTCCTCGTAGTGATTCCAATGGTGAAACCAGTGGTTCTCGTTTGTTCAACTTAGTTTTGGATATTGATATTGATGGACTATATGATGAGGTTGTGAATATGGTGATGGAAGAGTCTGCAAGAGAAGTAAAAATGGTTCCAGCATCAAAGACTGAGATTGATTCACTCAAGAAAGTGAATCTTGGAAAAGATATTACCATGGAAGAGTGTAGTATTTGTTTGGTGGAATTTAATGGGGACAAGAAGGTTTTAGCCATGCCATGCAAGCATATGTATCATCAAGAATGCATCACCCAGTGGCTTCAAAGGAGTGGTGTGTGCCCCTTGTGTCGCTATTCACTGTCCAAAAACAGCAGTTGA 708 0.3969 MEGSTPFSFTYEVFSPPLDERDVAFQQSLAEVLNVDFFSIKIHVTYRIICLTREQLRQLPEEIDYYESSYDSNMLLSYREVLESDLFMDIPDTIVPPELNEIVMPEVMRHARNLYESPRSDSNGETSGSRLFNLVLDIDIDGLYDEVVNMVMEESAREVKMVPASKTEIDSLKKVNLGKDITMEECSICLVEFNGDKKVLAMPCKHMYHQECITQWLQRSGVCPLCRYSLSKNSS 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0449 235 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Lal15g0449 235 PANTHER F6A14.12 PROTEIN-RELATED 15 230 - -
Lal15g0449 235 SUPERFAMILY RING/U-box 185 232 - -
Lal15g0449 235 SMART ring_2 186 226 IPR001841 -
Lal15g0449 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 233 IPR013083 -
Lal15g0449 235 CDD RING-H2_PA-TM-RING 185 227 - -
Lal15g0449 235 Pfam Ring finger domain 185 227 IPR001841 -
Lal15g0449 235 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 15 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0449 Lal-Chr15 3043398 3044105 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0449 156 230 C3H Transcription Factor Family AT1G26800 44.000 8.23e-16 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0449 - - lang:109327711 351.288