Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0440 ATGGTTTTACTTCGACAGTTGGGGCAGGGCATGCAGCAATTTCGGAATTACTATAACTCAGAAGTTCAAATGAGGAATAGTAGCTTCCCATGGGCATGTATCACAGAGACATACAATTACATTTCCTCAAAGCCAAAATCCAAAGCAGAAAACAAAGAAGTGGCTGCCAAGAAACACAGTGAAGCAGAAAAGAAACGAAGAACCCGAATCAACGATCAATATAACACCCTTCGTCATATCCTTCCCAACATAATCAACCAGCACCAGAATTCAAGCAGTGTATTATGCATTGGAAATGAACCCAACCGTGTGAAGACGGACAAGGCATCGATACTGGCAGAGACTATCAAGCAATTGAGGAAGCTGGAGAAAAGCGTGCCAAAAATGATATATCCTAGTTGGGAAGATGAGTTGACTTCAGAACAAGAGCAGCAGGGCCTAGTGAAAGTCACATTGAATTGTGACGATAGGCCAGGACTGATTTTAGCCGTTGAAAGAGCGGTGGGATCAGTGAAAGCCAGGGTGGTAAAGGCTGAGCTGGTGACAGTGGGTGGAAGAGCCAAATTTGTGTTGTGGGTGCAAGGTTTGGTGTCTGGAAAAGAAGGTTTGAGGATGCTAAGGAGAACTCTTAAGGTTGTCATGCACAAACCAGTTAAAATGCAGCATTTTAATCAACAGTTGTTGTAG 687 0.4352 MVLLRQLGQGMQQFRNYYNSEVQMRNSSFPWACITETYNYISSKPKSKAENKEVAAKKHSEAEKKRRTRINDQYNTLRHILPNIINQHQNSSSVLCIGNEPNRVKTDKASILAETIKQLRKLEKSVPKMIYPSWEDELTSEQEQQGLVKVTLNCDDRPGLILAVERAVGSVKARVVKAELVTVGGRAKFVLWVQGLVSGKEGLRMLRRTLKVVMHKPVKMQHFNQQLL 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0440 228 Pfam Helix-loop-helix DNA-binding domain 58 122 IPR011598 GO:0046983
Lal15g0440 228 CDD ACT_UUR-ACR-like 150 210 - -
Lal15g0440 228 PANTHER TRANSCRIPTION FACTOR BHLH131 13 95 - -
Lal15g0440 228 PANTHER TRANSCRIPTION FACTOR BHLH131 101 223 - -
Lal15g0440 228 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 53 131 IPR036638 GO:0046983
Lal15g0440 228 MobiDBLite consensus disorder prediction 45 66 - -
Lal15g0440 228 SMART finulus 60 128 IPR011598 GO:0046983
Lal15g0440 228 PANTHER TRANSCRIPTION FACTOR BHLH30 101 223 IPR045847 GO:0003700|GO:0006355
Lal15g0440 228 PANTHER TRANSCRIPTION FACTOR BHLH30 13 95 IPR045847 GO:0003700|GO:0006355
Lal15g0440 228 Gene3D - 48 129 IPR036638 GO:0046983
Lal15g0440 228 MobiDBLite consensus disorder prediction 46 66 - -
Lal15g0440 228 SUPERFAMILY ACT-like 146 214 IPR045865 -
Lal15g0440 228 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 54 122 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0440 Lal-Chr15 3015075 3019945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0440 54 193 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 36.424 4.93e-18 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal15g0440 HLH 5.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0440 - - lang:109349151 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0502 16 3175112 3176555 Lal15g0440 15 3015075 3019945 LSH