Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0425 ATGGGAAGAGGGAAGATTGTGATTAGGAGGATCGATAACTCTACGAGTAGGCAAGTAACTTTCTCAAAGAGGAGAAAGGGATTGATCAAGAAGGCCAAAGAGCTAGCAATTCTCTGTGATGCTGAAGTTGGACTTGTCATATTCTCCAACACTGGAAAGCTTTATGAATATGCAAGCACCAGCATGAAATCAGTGTTTGAGAGATACAACACATGCAAAGGGGAAAACCAACAGCTGATAAATCCAGAATCAGAAGTCAAGTTTTGGCAAAAGGAGGTAGGCATTTTAAGGCAGCAACTACAGAATCTACAAGAAAACCATAGGCAAATTATGGAGAATCAGCTCTCCGGTTTGAGTGTCAGAAACCTACAAGATATAGAGAATCAACTGGAAGTGAGTCTCCAAGGTGTCCGAATGAAAAAGGAACAAATTCTAACAGATGAAATCCGAGAGCTGAACCAAAAGGGCAATCTTATCCATCAGGAAAATGTGGAGCTTTATAAGAAAGTAAACCTCATTCAACAAGAAAACACGCAATTATGCAAAAAGGTCTATGGTACAACCGATGTGGCTGTGAGAAGAAATGTATTTGTTCCGCTTCCATTTGATGTTGATGCAGGGAAGGATCCACAAGCATTGATCCAACTTCAATTAAGCCAACCTGATCAAGAAACATGTGAGACATCAGGCAGTGGCAGTGCCACAAAATGA 711 0.4079 MGRGKIVIRRIDNSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLVIFSNTGKLYEYASTSMKSVFERYNTCKGENQQLINPESEVKFWQKEVGILRQQLQNLQENHRQIMENQLSGLSVRNLQDIENQLEVSLQGVRMKKEQILTDEIRELNQKGNLIHQENVELYKKVNLIQQENTQLCKKVYGTTDVAVRRNVFVPLPFDVDAGKDPQALIQLQLSQPDQETCETSGSGSATK 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0425 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal15g0425 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal15g0425 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal15g0425 236 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal15g0425 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal15g0425 236 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal15g0425 236 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Lal15g0425 236 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Lal15g0425 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lal15g0425 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 231 - -
Lal15g0425 236 Gene3D - 13 90 IPR036879 GO:0003677|GO:0046983
Lal15g0425 236 Coils Coil 86 113 - -
Lal15g0425 236 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lal15g0425 236 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 231 - -
Lal15g0425 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0425 Lal-Chr15 2896881 2903028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0425 1 232 MADS-box Gene Family AT2G22630 61.638 3.16e-97 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal15g0425 K-box 5.3e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0425 15 2896881 2903028 Lal15g0425 15 2896881 2903028 ECH