Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0422 ATGTCTACATCACGACCGTTCGATATGATAATGGATTTGAATGACTCCAAATACCTGTGGAAGATTGCAGTCAGAATAACTGACATTTGGTATGTGCAACTACCTCCCAAACCCGGACATCTGGAAATGATATTAATGGATTCTAAGGGGGACAGAATTCAAGTCTCTGTCCGAAAGGATCAGTTTAACGAATGGAGAGAACATTTGGTTGAGAGTTCAACTTATGTCATGCACAATTTTAATGTCATGCACAATGACATCCAATTTAAGGCATGTGACCATGTTTACAGAATGCAATTCACTGCCGGTACCACTCTCAAACAAAGAGAATTTCCTGATATTCCTGAATGGGAATATGATTTCAAAAAGTTTGGTGACATCCTTGACGGAAACGGTAGAAATAATTTACTAATAGATATCATTGGTGCTTTTGATAAGGTAATATTCTCCCAAACACAAGGCAATTTGAAGAAAGTTGTCTTCAGTTTGAAAGATTTTAGTGGTGATTTCATTAACTGTACTATGTGGGAATCACATGCTACCAAATTCGAGAAACACTATAACAACCACTGTAATGTTGAACCTATGATAATTTTGTTAACTCATGCTAGAATCAAAGAAGGACAAGATGATGATAATTTTGTTCACTCTAATTATCCACATAGCATTTCCAACTCATGGTGCGGATCAAAAATATTGATTGGTGAAGAAATTCCCAACATTGACAAGTACAAACAAAGTCTATCATGTGATACATTGAGCCATAGTAACAGCCAAATGTCACAATATTCTAACTTATCTGATGATGAGCGATTTATGTATAAAGCTGAAGTCAAGAGTATTACAGAAATTTCTGCAATTACATCTTCTGAGGAAATAACCTGTGTAACAGTTGGGACGACAGCAATGTTTGTTGTTGGCAAACACGGATGGTACTATGAAGGTTGTACTAAATGTACAAAGAAGACTGATGTTAAAGATGGCCCATTCACATGCAATATAATGTCTCTTTCACACCCCTTCGATATGATCACTGATGTGAATGATTCCAAACATTTTTGGAAAATAGCTGTTCGAATAACAAAACTTTGGTTTGTTCAAAAACCACCCAAATCTGGACATTTAGAGATGGTTTTGATGGATTCAAAGGGGCACAAAATTCAAGTCTCCGTTGTAAAGGAAGATTTTATTCGATGGCGTAATTATTTAGTGGAGTATGATACTTATATGATGCAAAACTTTGATGTGATGCTAAATGACTGTGAATTTAAAGCATGCGACCATCTTTATCGGATGGAGTTCAATGCCAATACAATAGTTGAACGACTTATATGTCCTGCTATTCCTCTTTTTGAATACGAATTCAAAAAATTTGCTGAAATTGTAGCTGGCCAGTTTTCAAGTTATTTGTTAATAGAAATTATCGGTGTAGTTGAATACAAGTCCATTTTTTCCCAAACAGAAACAAAATTAAAGAAATGTCAAGTTCATGTTGTGGATCAAAGTGATTGTCCAACAATAGTTTCAAGTTCATGGTGTGGATCAAAGTTATTGATTGGGGAAGAAATAAATGACATTGCAAAGTATAAGCAAAGGTTTTCTTCTTTGCCTCTATGGTTTGACCAATTCAGTGAAGGACAATGCCAGTTACCATCACCTCAAGCTGTGTCTTTTACTGCTGAACATGATCCAGACCACCTTGAAGTCATAACTTCTTCCAAGAGAATGTGGGGTGAGTTAGATTTGGATTTGGCTCAAAGCCCTTTACAATCTTCCTCTGGAATTTCATCTTCCAATGTTGCAAAGCATATGAAGACTAAATAA 1824 0.358 MSTSRPFDMIMDLNDSKYLWKIAVRITDIWYVQLPPKPGHLEMILMDSKGDRIQVSVRKDQFNEWREHLVESSTYVMHNFNVMHNDIQFKACDHVYRMQFTAGTTLKQREFPDIPEWEYDFKKFGDILDGNGRNNLLIDIIGAFDKVIFSQTQGNLKKVVFSLKDFSGDFINCTMWESHATKFEKHYNNHCNVEPMIILLTHARIKEGQDDDNFVHSNYPHSISNSWCGSKILIGEEIPNIDKYKQSLSCDTLSHSNSQMSQYSNLSDDERFMYKAEVKSITEISAITSSEEITCVTVGTTAMFVVGKHGWYYEGCTKCTKKTDVKDGPFTCNIMSLSHPFDMITDVNDSKHFWKIAVRITKLWFVQKPPKSGHLEMVLMDSKGHKIQVSVVKEDFIRWRNYLVEYDTYMMQNFDVMLNDCEFKACDHLYRMEFNANTIVERLICPAIPLFEYEFKKFAEIVAGQFSSYLLIEIIGVVEYKSIFSQTETKLKKCQVHVVDQSDCPTIVSSSWCGSKLLIGEEINDIAKYKQRFSSLPLWFDQFSEGQCQLPSPQAVSFTAEHDPDHLEVITSSKRMWGELDLDLAQSPLQSSSGISSSNVAKHMKTK 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0422 607 CDD RPA1_DBD_B_like 157 248 - -
Lal15g0422 607 Pfam Domain of unknown function DUF223 376 465 IPR003871 -
Lal15g0422 607 Pfam Domain of unknown function DUF223 42 136 IPR003871 -
Lal15g0422 607 Gene3D - 112 258 IPR012340 -
Lal15g0422 607 SUPERFAMILY Nucleic acid-binding proteins 340 442 IPR012340 -
Lal15g0422 607 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 381 478 - -
Lal15g0422 607 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 39 333 - -
Lal15g0422 607 PANTHER REPLICATION FACTOR A 1, RFA1 381 478 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lal15g0422 607 PANTHER REPLICATION FACTOR A 1, RFA1 39 333 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lal15g0422 607 SUPERFAMILY Nucleic acid-binding proteins 6 108 IPR012340 -
Lal15g0422 607 CDD RPA1_DBD_A_like 21 105 - -
Lal15g0422 607 Gene3D - 340 442 IPR012340 -
Lal15g0422 607 Gene3D - 5 108 IPR012340 -
Lal15g0422 607 SUPERFAMILY Nucleic acid-binding proteins 119 253 IPR012340 -
Lal15g0422 607 CDD RPA1_DBD_A_like 355 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0422 Lal-Chr15 2877497 2883647 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0422 10 207 Core DNA Replication Machinery Family AT5G45400 26.190 4.86e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0422 - - lang:109343677 479.559