Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0419 ATGGAGCTTTCACAACTTGGTTTTCTAGAGGAACTACTAGCTCCAAGAAGAGACACTTGGAATAATGCTTTGTCCACAGGGCTGAATGAACTATTCCCTAGTGGTTGGAGCTTTGGCTCTTTTGATGAAAATCCTTCTTTAGCTGCTTTGAATCCATCATTTTCTGCATTCTCAACACCAATAAACCATAGATTTGAATGCCCTTATGGAAATGAAGCTGCAGCATATCCATTTGGTGATGGGTTCACAATGCCAGAGCTTGATTCATCATACACCAGGAATTATGAATCAGCACCACTTTTACCACAAGAAGATAACCCTTCAATGCATGATGAAGATCTTGGCTTTTTGGGGAGTGATAACCTGAGTATGGAAGAAAGGAATAATGGCTTCAAAGTTGAGGAACAAGCTTCAGAGATGCCAGTTTTCAACAAGGGCATTTGTGGAGAGAAAAAATCAAAATTAAAGAAAATAGAAGGGCAGCCCTCAAAGAATCTCATGGCAGAAAGAAGGAGAAGAAAACGTCTCAATGATAGGCTTTCCATGCTAAGGTCAATAGTCCCTAAGATCAGCAAGATGGACAGGACTTCTATTCTTGGAGATACTATTGATTACATGAAAGAACTTCTAGAAAGAATAGGAAAGTTGAAAGAAGAAGAAATTGACGAGGGGACTAATAAGATAAGCATCATTGACAATTCTAAGGAGCAAAATCCAAGTGAAGGAATGGTAAGAAATTCCCCCAAGTTTAATGTTGAGAGGAAAGACAAGGACACAAAGATAAGCATCTGCTGTGCCACAAAGCCTGGATTATTACTGTCAACAGTGAACACCTTAGAAGCACTAGGCCTTGAGATTCACCAGTGTGTAATAAGCAGCTTCAATGATTTTTCTCTGCAAGCATCTTGCTCAGAGGCAACTGAACAAATAAACTGTATTAACCCTGAAGACATAAAGCAAGCACTATTCAGAAATGCAGGTTATGGTGGAAGATGTCTCTAG 1002 0.3952 MELSQLGFLEELLAPRRDTWNNALSTGLNELFPSGWSFGSFDENPSLAALNPSFSAFSTPINHRFECPYGNEAAAYPFGDGFTMPELDSSYTRNYESAPLLPQEDNPSMHDEDLGFLGSDNLSMEERNNGFKVEEQASEMPVFNKGICGEKKSKLKKIEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLKEEEIDEGTNKISIIDNSKEQNPSEGMVRNSPKFNVERKDKDTKISICCATKPGLLLSTVNTLEALGLEIHQCVISSFNDFSLQASCSEATEQINCINPEDIKQALFRNAGYGGRCL 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0419 333 Pfam Helix-loop-helix DNA-binding domain 166 209 IPR011598 GO:0046983
Lal15g0419 333 SMART finulus 166 215 IPR011598 GO:0046983
Lal15g0419 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 219 IPR036638 GO:0046983
Lal15g0419 333 CDD ACT_UUR-ACR-like 259 300 - -
Lal15g0419 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983
Lal15g0419 333 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 333 - -
Lal15g0419 333 PANTHER - 2 333 - -
Lal15g0419 333 Gene3D - 168 242 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0419 Lal-Chr15 2854006 2856841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0419 151 333 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 67.027 2.11e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal15g0419 HLH 7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0419 - - gmx:100806571 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0479 16 2993256 2995021 Lal15g0419 15 2854006 2856841 LSH
Lal15g0419 15 2854006 2856841 Lal23g1104 23 12662783 12664654 LSH