Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0411 ATGGCCTCTTCTGACCCCTTCACCGACAAGAACATCGTGTTCCGTAAGCTCAAGGCAAAATCTGAAAATAAGTTGTGTTTTGATTGCAATTCAAAGAACCCAACTTGGGCTTCTGTGACATATGGGATATTTCTCTGCATCGATTGTTCTGCTGTTCATCGCAGTCTCGGCGTTCACATCAGCTTTGTCAGGCAAATCTACAACTTTAGACTCATGGAGTCGTGA 225 0.44 MASSDPFTDKNIVFRKLKAKSENKLCFDCNSKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRQIYNFRLMES 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0411 74 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H 1 65 - -
Lal15g0411 74 SMART arf_gap_3 11 73 IPR001164 GO:0005096
Lal15g0411 74 Pfam Putative GTPase activating protein for Arf 13 66 IPR001164 GO:0005096
Lal15g0411 74 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 1 65 - -
Lal15g0411 74 Gene3D Arf GTPase activating protein 2 70 IPR038508 -
Lal15g0411 74 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Lal15g0411 74 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Lal15g0411 74 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 66 IPR001164 GO:0005096
Lal15g0411 74 SUPERFAMILY ArfGap/RecO-like zinc finger 13 66 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0411 Lal-Chr15 2782786 2787418 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0411 2 66 C2H2 Transcription Factor Family AT3G07940 50.769 9.57e-16 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0411 K12493 - qsu:112012447 127.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0411 15 2782786 2787418 Lal15g0411 15 2782786 2787418 ECH
Lal16g0467 16 2895253 2899745 Lal15g0411 15 2782786 2787418 LSH
Lal15g0411 15 2782786 2787418 Lal23g1117 23 12731789 12737488 LSH
Lal15g0411 15 2782786 2787418 Lal16g1746 16 16474320 16484497 PCT
Lal16g1746 16 16474320 16484497 Lal15g0411 15 2782786 2787418 PCT