Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0405 ATGGCTTTAGAAACTCTTCCAACTAATGAGTTTTCCAACTTCATTATCTATGACACTATCTTTGCCACTCCATTTAGCAGCCATAACATGTCAGAGGCTAGTTTCTTACTAGAAGAGGACAGAGTTAAATATCATGAACAACACCATGAGCCTAATGCATTCAATAACATTGCATTTCGGGCGCGAAAGTGCCAATCCGGTGAACCAGAAGCCGTTGGTCGGAGGCAGAATTTTGCAGGGCAAGGGAGGAAAAGGAGGAGAAGAAAAACAAGAGTTTGCAAGAACAAGGAAGAGGCTGAGGCTCAAAGAATGACTCACATTACAGTAGAAAGGAACAGGAGGAAGCAGATGAATGAACATCTTGCTGTTCTGCGTTCACTCATGCCTGAATCCTATGTCCAAAGGGGTGATCAGGCCTCTATAGTAGGTGGTGCTATAGAATTTGTGAAGGAACTGGAGCACCTTTTGCAATCCCTTGAGACTAAAAAAATGCAGCTTTTAGATAAAGGAGTGGCACAAGCCAATGAAGATACAACCATTCCAAAAATCATGACACCCCCTTTTGCACAATTTTTTGTGCATCCACAGTACACATGGTCCCAGACTCCTAACAAACACACATCTAAGAGTAAGTCAGGAGCCATAGCTGATATTGAAGTTACTTTGATCGAAACGCATGCAAGCGTTCGAATTCTATCGAAAAGAAGACTCAGGCAGCTATCAAAGTTGGTTGCTGGTTTTCAAACACTCTACCTCACCATGCTACACCTCAATGTCACCACCATGGATTCCTTGGTACTCTATTCTGTCAGTGCTAAGGTTGAAGAAGGATGCCAACTTGGTTCTGTAGATGACATTGCAACAGCAATTCACCACTTGCTTAGAATGATTGATGAAGAGGCTTCCCTTTGTTGTTGA 918 0.427 MALETLPTNEFSNFIIYDTIFATPFSSHNMSEASFLLEEDRVKYHEQHHEPNAFNNIAFRARKCQSGEPEAVGRRQNFAGQGRKRRRRKTRVCKNKEEAEAQRMTHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLLQSLETKKMQLLDKGVAQANEDTTIPKIMTPPFAQFFVHPQYTWSQTPNKHTSKSKSGAIADIEVTLIETHASVRILSKRRLRQLSKLVAGFQTLYLTMLHLNVTTMDSLVLYSVSAKVEEGCQLGSVDDIATAIHHLLRMIDEEASLCC 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0405 305 Pfam Helix-loop-helix DNA-binding domain 102 153 IPR011598 GO:0046983
Lal15g0405 305 CDD bHLH_AtFAMA_like 104 163 - -
Lal15g0405 305 PANTHER TRANSCRIPTION FACTOR BHLH71 1 304 - -
Lal15g0405 305 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 101 152 IPR011598 GO:0046983
Lal15g0405 305 PANTHER MAX DIMERIZATION, MAD 1 304 - -
Lal15g0405 305 Gene3D - 93 169 IPR036638 GO:0046983
Lal15g0405 305 SMART finulus 107 158 IPR011598 GO:0046983
Lal15g0405 305 MobiDBLite consensus disorder prediction 66 100 - -
Lal15g0405 305 Coils Coil 149 169 - -
Lal15g0405 305 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 101 166 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0405 Lal-Chr15 2745111 2747608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0405 93 274 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 57.692 9.65e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal15g0405 HLH 3.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0405 - - pvu:PHAVU_003G284500g 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0405 15 2745111 2747608 Lal15g0405 15 2745111 2747608 ECH