Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0403 ATGGATCATACCCGTGACAGCAACGTGGTTCAAATAATCACCGGCGGTGAAAACTGGTCTTCCTCCGGCTCCGGCGACCAATCCGTTTGGGCAACCGAAGATGATTACAGATTCTTCAACACCAACAACGACGCTGAATCTACCCCAAAGAGATCGAGGAACTCGCAGGACGCAACGCCATCGTCTAGTAATAACCGTTCCAAAGCGATTGGGAAAATGTTCTTCAAGACGAAGCTGTGTTGCAAGTTCCGCACCGGCACGTGTCCCTACGTGACGAACTGTAACTTCGCGCACAGTAATGAAGAGCTGCGGCGGCCACCGCCGAACTGGCAGGAGATTGTTGCGGCGCAGGAGGAGGAGAAATCGGTGCCGCCGGTGGAGGAGTTTCAGATTCCATCGCTTTCGGGGTATTCAGGGGAGATTCAGAGGTCTTATAAGGGGAGACATTGCAAGAAGTTTTATACTGAGGAAGGGTGCCCCTATGGTGATAGTTGCACTTTTTTGCATGATGAGAATTCCAGGAATAGAGAGAGCGTGGCTATAAGTTTGGGACCTGGTGGGTATGGTGGAGGTGGCGGCGGCAGCGGTGGTGGTGCTGGGAGTGGTGGTGGTGGTAGTAGTTCGAATTTGAAGCCGTCGAATTGGAAGACGAGGTTTTGCAATAAGTGGGAGATGACAGGGTATTGCCCGTTTGGGAACAAATGTCATTTTGCTCATGGTGCTGCAGAATTGAGCACTCATGGTGAGTTTGTGGAGGGAGAAAGTAGAGACACCGCACCTGCCGGTACTCCTGACATGAAACATGGAGGAGTATCTTCAAAAACTCCTGCTGATAATGTAGTAACATCAGTTATTCCAGTTACTCATTCTGATATCTATCACATTGGGGTTCCTTCACAAAGGCCTTCCGTTGTGATTCAGAGGCCAGGACAGAGAACTCATCAGAAATGGAAAGGTCCAGATAAAATAAGTAGGATATATGGTGATTGGATTGATGACATCGAATAG 1008 0.4931 MDHTRDSNVVQIITGGENWSSSGSGDQSVWATEDDYRFFNTNNDAESTPKRSRNSQDATPSSSNNRSKAIGKMFFKTKLCCKFRTGTCPYVTNCNFAHSNEELRRPPPNWQEIVAAQEEEKSVPPVEEFQIPSLSGYSGEIQRSYKGRHCKKFYTEEGCPYGDSCTFLHDENSRNRESVAISLGPGGYGGGGGGSGGGAGSGGGGSSSNLKPSNWKTRFCNKWEMTGYCPFGNKCHFAHGAAELSTHGEFVEGESRDTAPAGTPDMKHGGVSSKTPADNVVTSVIPVTHSDIYHIGVPSQRPSVVIQRPGQRTHQKWKGPDKISRIYGDWIDDIE 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0403 335 SUPERFAMILY CCCH zinc finger 144 172 IPR036855 GO:0046872
Lal15g0403 335 SUPERFAMILY CCCH zinc finger 72 105 IPR036855 GO:0046872
Lal15g0403 335 SUPERFAMILY CCCH zinc finger 211 245 IPR036855 GO:0046872
Lal15g0403 335 MobiDBLite consensus disorder prediction 7 27 - -
Lal15g0403 335 Gene3D - 207 246 - -
Lal15g0403 335 Gene3D - 69 105 - -
Lal15g0403 335 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 14 332 - -
Lal15g0403 335 Pfam CCCH-type zinc finger 148 170 IPR041367 -
Lal15g0403 335 PANTHER CCCH ZINC FINGER/TIS11-RELATED 14 332 IPR045877 GO:0003729
Lal15g0403 335 Gene3D - 138 184 - -
Lal15g0403 335 ProSiteProfiles Zinc finger C3H1-type profile. 74 101 IPR000571 GO:0046872
Lal15g0403 335 MobiDBLite consensus disorder prediction 254 277 - -
Lal15g0403 335 MobiDBLite consensus disorder prediction 40 67 - -
Lal15g0403 335 ProSiteProfiles Zinc finger C3H1-type profile. 214 242 IPR000571 GO:0046872
Lal15g0403 335 ProSiteProfiles Zinc finger C3H1-type profile. 144 172 IPR000571 GO:0046872
Lal15g0403 335 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 75 99 IPR000571 GO:0046872
Lal15g0403 335 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 215 240 IPR000571 GO:0046872
Lal15g0403 335 SMART c3hfinal6 214 241 IPR000571 GO:0046872
Lal15g0403 335 SMART c3hfinal6 144 171 IPR000571 GO:0046872
Lal15g0403 335 SMART c3hfinal6 74 100 IPR000571 GO:0046872
Lal15g0403 335 MobiDBLite consensus disorder prediction 1 27 - -
Lal15g0403 335 MobiDBLite consensus disorder prediction 179 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0403 Lal-Chr15 2735617 2739028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0403 216 244 C3H Transcription Factor Family AT1G68200 62.069 3.48e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal15g0403 zf-CCCH 2.4e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0403 - - lang:109349089 574.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0403 15 2735617 2739028 Lal15g0403 15 2735617 2739028 ECH