Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0402 ATGGCACCTTCATTCGAACCTAGTACTCACACAGTTTGTGTAATGGACGCTTCTGCTCAACTGGGCTTCACCCTCGTCCAAACGCTACTTCAAAGGGGCTACACTGTTCATGCCTCCCTTCAAAACCATGGGAATGAATTGCTCAATGGGATTTCAGCTGATCCCAATAAGCTCAAGATTTTCAGATCAGACCCTTTTGATTATCACAGCATAATTGATGCACTCAGAGGCTGCTCTGGCTTGTTCTACTCCTTTGAACCACCCCTTGATCAACCCCACTATGATGAACACATGGCAGACGTGGAGGTGAGAGCTGCACACAACGTGCTAGAAGCTTGTGCTCAAGCAGAAACAATAGATAAAGTCGTTTTTACATCTTCAGCCACAGCAGTATTTTGGAGGGAAGATCGCAAAACCATGGACCTAGATTTAGATGAGAGACACTGGACTGATGTCAATTTCTGTCGTAAATTCAAGTTATGGCATGGGATGTCAAAGACACTAGCAGAGAAAACAGCATGGGCGTTAGCAATGGACAGAGGAGTGAATATGGTGTCAATAAACAAAGGTTTGTTGATGGGTCATGATCTATCCATTAAAAATCCTTACTTGAGAGGAGCAGCTGAAATGTACGAGGATGGTGTGTTCGTGACCGTTGATCTTGGATTCTTGGTAGATGCCCATATATGCGTCTACGAGGATGTTTCATCCTACGGTCGTTATTTGTGCTTCAATCATATCATCAACACCCACGATGACGCTGTTCAGCTCGCACGTCACTTGACACCAACTGCTTCTTCTTCCTTACCTCAAAGCGTTGACCATGGTAAGAATTTTATCGAACAGAGAATAAGTAACAAGAAGTTGAACAAATTGATGGTGGACTTTGAGGCTTGA 897 0.4392 MAPSFEPSTHTVCVMDASAQLGFTLVQTLLQRGYTVHASLQNHGNELLNGISADPNKLKIFRSDPFDYHSIIDALRGCSGLFYSFEPPLDQPHYDEHMADVEVRAAHNVLEACAQAETIDKVVFTSSATAVFWREDRKTMDLDLDERHWTDVNFCRKFKLWHGMSKTLAEKTAWALAMDRGVNMVSINKGLLMGHDLSIKNPYLRGAAEMYEDGVFVTVDLGFLVDAHICVYEDVSSYGRYLCFNHIINTHDDAVQLARHLTPTASSSLPQSVDHGKNFIEQRISNKKLNKLMVDFEA 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0402 298 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 18 171 IPR002225 GO:0003854|GO:0006694|GO:0016616
Lal15g0402 298 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 264 IPR036291 -
Lal15g0402 298 CDD FR_SDR_e 12 294 - -
Lal15g0402 298 Gene3D - 4 298 - -
Lal15g0402 298 PANTHER CINNAMOYL-COA REDUCTASE-LIKE SNL6 8 297 - -
Lal15g0402 298 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 8 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0402 Lal-Chr15 2730566 2733675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0402 10 296 Monolignol Biosynthesis Gene Families AT5G58490 32.131 6.00e-41 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0402 - - gmx:100790333 540.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0402 15 2730566 2733675 Lal15g0402 15 2730566 2733675 ECH
Lal16g0452 16 2811140 2813526 Lal15g0402 15 2730566 2733675 LSH