Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0399 ATGGGAAGGCCACCATGTTGTGAAGAGATTATTGTAAAGAAGGGTCCATGGACACCAGAAGAAGATGAGAAACTGACTGATTATATCAACAAACATGGTCAAGGAAGTTGGAGAACACTTGCAAAGCGAGCTGGTCTCAATAGGTGTGGCAAGAGCTGCAGGTTAAGGTGGACAAACTATCTCAGACCTGATATCAAGAGAGGCAAGTTCACTGAAGAAGAGGAGCAACTCGTCATCAACCTTCATTCTGTTCTTGGAAACAAATGGTCTAAGATTGCATGTCATCTTCCAGGAAGAACTGATAATGAGATCAAGAATTTCTGGAACACAAACATAAGAAAAAAGCTTCTCCAAATGGGTATTGACCCAGAAACTCACAAGCCAAGGACAGATTTCAATCACATCATGGAACTTGCACAGTTGATTGGCATGTCAAACTTTGGCAATCCTATGAGTGCTTGGGGTAACCCTTTAGGTTTTCATGCAGATGTGACTCAGCTAGCCAAACTACAACAACTGCAAAATCTGTTGCAAATTATTAACAACAATTCATTTGTTAACATGGGGAACCCTTCCTTCTCAGGCAATCCTAGCCTCAACCCACTTGATGCATTTCTGAATGGGACAAATATCATTCAAACTAAGGAGCCTGCTTTCTTGAGAGGTCAAGGGTATGCAAACCCTGGCTTATTCTCTCAAGCACACAGTGACTCCTCAAAATCATGGACAGATGTAGAAGGTGTATCTACTAATCATCAAGAATTTGATTACAACAAAGTTAGCAGCAACACATCACTTGAAAATCAAGAAGAAAATCCACTTCCTGCATTAGTTGCTTTCTCTCCAAAGATGGAAACCTTCAGCCAAAGGGACAATGGTTTTGACAAAGCTCAAACTTCGATCCAATCACCTTCCAACACATTCTTTAATGATTGGGAGGAGTTCCTTGACAACGAAAGAAGCGGTTCCTACTGGAAAGAGATTCTAGATTTGTCATCCTCTTCAACTTCACCAATTTCCTGGTAG 1026 0.4113 MGRPPCCEEIIVKKGPWTPEEDEKLTDYINKHGQGSWRTLAKRAGLNRCGKSCRLRWTNYLRPDIKRGKFTEEEEQLVINLHSVLGNKWSKIACHLPGRTDNEIKNFWNTNIRKKLLQMGIDPETHKPRTDFNHIMELAQLIGMSNFGNPMSAWGNPLGFHADVTQLAKLQQLQNLLQIINNNSFVNMGNPSFSGNPSLNPLDAFLNGTNIIQTKEPAFLRGQGYANPGLFSQAHSDSSKSWTDVEGVSTNHQEFDYNKVSSNTSLENQEENPLPALVAFSPKMETFSQRDNGFDKAQTSIQSPSNTFFNDWEEFLDNERSGSYWKEILDLSSSSTSPISW 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0399 341 CDD SANT 69 112 IPR001005 -
Lal15g0399 341 ProSiteProfiles Myb-like domain profile. 13 61 IPR001005 -
Lal15g0399 341 CDD SANT 16 61 IPR001005 -
Lal15g0399 341 Gene3D - 68 135 - -
Lal15g0399 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lal15g0399 341 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal15g0399 341 Gene3D - 13 66 - -
Lal15g0399 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lal15g0399 341 PANTHER MYB TRANSCRIPTION FACTOR 1 331 - -
Lal15g0399 341 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal15g0399 341 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Lal15g0399 341 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 331 - -
Lal15g0399 341 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Lal15g0399 341 SMART sant 13 63 IPR001005 -
Lal15g0399 341 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0399 Lal-Chr15 2714837 2716757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0399 1 330 MYB Transcription Factor Family AT5G16770 47.536 2.02e-91 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal15g0399 Myb_DNA-binding 1.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0399 K09422 - gmx:778082 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0399 15 2714837 2716757 Lal15g0399 15 2714837 2716757 ECH
Lal16g0448 16 2781955 2784391 Lal15g0399 15 2714837 2716757 LSH