Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0398 GACTCTTTTTTTCAGGCCAACATGTCAGACCGGGGTACATTCTTTGGTGACTCGGTTGGGACTAATGCTAAGGATGCAGAGAGAGAAAAAGAACATAATAAGGTTCCATTGTTAAAGCTGTTCTCTTTTGCTGATTTTTATGATCATCTCTTAATGGCTATTGGATCTATTGGGGCATGTGTTCATGGTGCTTCAGTTCCTGTTTTCTTCATCTTCTTTGGAAAGTTGATCAATGTCATAGGTGTCGCTTACCTTTTCCCTAAAGAAGCTTCACATCAAGTTGCCAAGTACTCATTGGATTTTGTGTATCTAAGTATAGCAATATTGTTTTCATCTTGGACAGAGGTAGCTTGTTGGATGCATACTGGTGAAAGACAAGCAGCAAAGATGAGAATGGCTTATTTAAGGGCAATGTTGAATCAAGATATAAGCCTATTTGATACAGAGGCATCAACAGGAGAGGTCATTTCTGCTATTACAAGTGACATTATCATTGTTCAAGATGCTATATCAGAGAAGGTAGGAAACTTCATGCATTACATAAGCAGATTCATAGCGGGCTTTACTATTGGCTTTGTGAGTGTGTGGCAGATTAGTTTAGTGACACTTTCAATTGTCCCTTTGATTGCACTAGCTGGAGGTCTTTATGCATACGTCACAATTGGCCTTATTGCAAAAATTAGAAAAGCTTATGTCAGGGCTGGTGAAATTGCTGGAGAGGTGATAGGCAATATTAGAACAGTGCAAGCATTTGCCGGAGAAGAAAAGGCTGTGAGATCATATAAGGAGGCTCTCATGAAAACTTACAAAAATGGTAGAAAAGCAGGTTTAGCAAAGGGTTTGGGACTAGGCTCAATGCATTGTGTCCTTTTTCTATCATGGGCATTGCTTACTTGGTTCACTAGCTTTGTTGTGCACAAGCATATCGCGAATGGGGGCGAGTCTTTCACTACCATGCTCAATGTTGTCATCTCTGGCTTGTCACTTGGACAGGCAGCACCAGATATCTCTGCATTTATCCGAGCAAAGGCAGCTGCATATCCAATTTTTGAGATGATAGAGAGGGACACAGTGAGCAAAAGGGGCTCAAAAGCAGGTCTCAAATTAAGCAAATTGGAGGGCCAAATCCAATTCAAGGATGTTTGTTTCAGTTATCCATCTCGTCCCGATGTACTTATCTTCAACAACCTCTGTCTTGACATTCCCGCAGGGAAAATCGTAGCCCTTGTGGGAGGAAGTGGTTCTGGAAAGAGCACTGTTATATCATTGATCGAACGCTTCTATGAACCCCTTTCTGGTCAGATACTATTCGATAGGAATGATATTAGGGAACTTGATCTCAATTGGATGAGGCATCAAATTGGACTAGTTAATCAAGAGCCTGCCCTTTTTGCTACAAGCATCAAAGAGAACATATTGTATGGAAAAGATGATGCCACACTTGAAGAACTAAAACGTGCCGTGAAGCTTTCAGATGCTCAATCTTTTATTAACAATCTTCCTGATAGATTAGAAACTCAGGTTGGTGAGAGAGGGATACAACTATCAGGTGGACAAAAACAAAGGATTGCAATATCGCGCGCTATAGTGAAGAATCCATCGATTCTTTTGTTGGATGAAGCAACCAGTGCTCTGGATGCCGAGTCAGAGAAGAGTGTACAGGAGGCTATTGACCGCGTCATGGTTGGTAGAACAACTGTGGTAGTAGCACATAGACTTTCTACCATTAGGAATGCAGATGTGATCGCGGTTGTTCAGGGAGGGAGGATTGTGGAAACTGGCAACCATGAAGAACTCATTTCCAACCCAACTAGTGTATATGCATCTCTTGTTCAACTCCAGGAAGCAACTTCTGTGCAAAGCCACCCTTCAGTTGGTCCTACCTTGGGACGACAATCAAGCATAAAGTATTCAAGAGAATTATCCCGTACAACAAGTTTTGGTGCTAGTTTTCGATCAGATAAAGAATCTGTTGGCCGGGTTGGTACAGATGAGGTAGAAAATTCAAGCAAGTTGAGACATGTTTCGGCAAGAAGGCTATATTCTATGGTTGGTCCTGACTGGTATTATGGGGTTGTTGGGACATTATGTGCATTTGTTGCTGGGGCACAGATGCCACTTTTTGCTCTTGGAATCTCTCATGCTCTTGTATCATTCTATATGGACTGGGATACAACACGTCATGAAGTAAAAAAAATTGCATTACTCTTCTGTGGAGCAGCAGTTATAACTATCACTGTACATGCCATTGAACATCTTTCTTTCGGAATCATGGGGGAGCGACTTACCCTTCGTGTGAGAGAAAATATGTTTTCAGCTATTTTGAAGAATGAAATTGGCTGGTTTGATGATACAAACAACACAAGTTCTATGCTTTCTTCGCGTTTAGAGACTGATGCAACCTTATTACGAACTATAGTTGTTGATCGTTCCACAATTCTATTACAGAACATTGGCCTGGTTGTTGCTTCATTTATTATTGCCTTCATCTTAAACTGGAGAATAACGCTTGTTGTCATAGCCACATATCCTTTGGTCATTAGTGGTCACATCAGTGAGAAACTTTTCATGAAAGGTTATGGTGGCAACTTGAGCAAAGCATATTTAAAAGCCAACATGCTGGCTGGAGAGGCTGTGAGCAATATGCGCACTGTTGCTGCATTTTGTTCTGAGGAAAAGGTCCTTGACCTTTATGCTAATGAGCTTGTTGATCCTTCGAAACGATCATTTCAACGGGGCCAAATTGCTGGCTTATTCTATGGCATTTCTCAGTTCTTTGTTTTCTCATCTTATGGCCTAGCCTTGTGGTATGGATCTGTTTTGATGGGAAAGGAGCTTGCTAGCTTTAAATCGGTTATGAAGTCGTTTATGGTTTTAATTGTAACAGCTCTGGCTATGGGGGAGACTTTGGCCCTGGCCCCAGACCTTTTGAAAGGGAATCAAATGGTTGCATCTGTTTTTGAAGTGATGGACAGAAAGTCAGGAATAACAGGTGATGCTGGAGAAGAATTGAAGACAGTGGAAGGAACAATTGAGCTAAAAAAAATCCAGTTTAGCTACCCTTCGAGGCCAGATGTGATTATTTTCAAGGATTTCAATCTAACAGTCCCTTCAAGCAAGAGTGTTGCCTTAGTAGGGCAAAGTGGTTCTGGTAAAAGCTCTGTGATCTCCCTTATACTCAGATTTTACGATCCAACATCTGGGAGAGTGTTAATTGATGGAAAAGACATCAGGAGACTCAATCTGAAATCTCTAAGGAAACACATTGGTCTTGTGCAACAAGAACCGGCTCTTTTCGCAACATCAATCTATGAAAACATTCTTTATGGAAAAGAAGTAGCTTCAGACTCAGAAGTAATTGAAGCAGCAAAACTTGCCAATGCTCATACCTTCATAAGTGGTCTTCCAGAGGGTTACTCAACCAAAGTTGGTGAAAGAGGAGTGCAACTATCAGGTGGACAAAGACAAAGGGTAGCCATTGCCAGAGCTGTTCTAAAGAACCCTGAAATCTTGCTCCTAGATGAAGCCACAAGTGCACTAGATGTGGAATCAGAGCGTATTGTACAACAAGCTTTGGACAGATTAATGCAGAACAGAACAACAATTATGGTGGCACATAGACTATCTACTATAAGAAATGCAGACCAAATCTCAGTTTTAAAGGATGGGAAGATAATTGATCAAGGAACTCATTCAAGTCTTATGGAGAATAAAAATGGACCATACTTTAAACTAGTCAACCTTCAACAACAGCATCAAGTATAG 3765 0.4109 DSFFQANMSDRGTFFGDSVGTNAKDAEREKEHNKVPLLKLFSFADFYDHLLMAIGSIGACVHGASVPVFFIFFGKLINVIGVAYLFPKEASHQVAKYSLDFVYLSIAILFSSWTEVACWMHTGERQAAKMRMAYLRAMLNQDISLFDTEASTGEVISAITSDIIIVQDAISEKVGNFMHYISRFIAGFTIGFVSVWQISLVTLSIVPLIALAGGLYAYVTIGLIAKIRKAYVRAGEIAGEVIGNIRTVQAFAGEEKAVRSYKEALMKTYKNGRKAGLAKGLGLGSMHCVLFLSWALLTWFTSFVVHKHIANGGESFTTMLNVVISGLSLGQAAPDISAFIRAKAAAYPIFEMIERDTVSKRGSKAGLKLSKLEGQIQFKDVCFSYPSRPDVLIFNNLCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGQILFDRNDIRELDLNWMRHQIGLVNQEPALFATSIKENILYGKDDATLEELKRAVKLSDAQSFINNLPDRLETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEAIDRVMVGRTTVVVAHRLSTIRNADVIAVVQGGRIVETGNHEELISNPTSVYASLVQLQEATSVQSHPSVGPTLGRQSSIKYSRELSRTTSFGASFRSDKESVGRVGTDEVENSSKLRHVSARRLYSMVGPDWYYGVVGTLCAFVAGAQMPLFALGISHALVSFYMDWDTTRHEVKKIALLFCGAAVITITVHAIEHLSFGIMGERLTLRVRENMFSAILKNEIGWFDDTNNTSSMLSSRLETDATLLRTIVVDRSTILLQNIGLVVASFIIAFILNWRITLVVIATYPLVISGHISEKLFMKGYGGNLSKAYLKANMLAGEAVSNMRTVAAFCSEEKVLDLYANELVDPSKRSFQRGQIAGLFYGISQFFVFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRKSGITGDAGEELKTVEGTIELKKIQFSYPSRPDVIIFKDFNLTVPSSKSVALVGQSGSGKSSVISLILRFYDPTSGRVLIDGKDIRRLNLKSLRKHIGLVQQEPALFATSIYENILYGKEVASDSEVIEAAKLANAHTFISGLPEGYSTKVGERGVQLSGGQRQRVAIARAVLKNPEILLLDEATSALDVESERIVQQALDRLMQNRTTIMVAHRLSTIRNADQISVLKDGKIIDQGTHSSLMENKNGPYFKLVNLQQQHQV 1254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0398 1254 ProSitePatterns ABC transporters family signature. 1150 1164 IPR017871 GO:0005524
Lal15g0398 1254 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 376 612 IPR003439 GO:0005524
Lal15g0398 1254 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 28 1251 - -
Lal15g0398 1254 SMART AAA_5 1038 1224 IPR003593 -
Lal15g0398 1254 SMART AAA_5 403 589 IPR003593 -
Lal15g0398 1254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 368 614 IPR027417 -
Lal15g0398 1254 CDD ABC_MTABC3_MDL1_MDL2 1011 1249 - -
Lal15g0398 1254 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 53 341 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal15g0398 1254 Pfam ABC transporter transmembrane region 693 964 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal15g0398 1254 Pfam ABC transporter transmembrane region 54 324 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal15g0398 1254 ProSitePatterns ABC transporters family signature. 515 529 IPR017871 GO:0005524
Lal15g0398 1254 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 692 978 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal15g0398 1254 CDD ABC_6TM_Pgp_ABCB1_D2_like 681 996 - -
Lal15g0398 1254 CDD ABC_6TM_Pgp_ABCB1_D1_like 52 349 - -
Lal15g0398 1254 Gene3D ABC transporter type 1, transmembrane domain 39 980 IPR036640 GO:0005524|GO:0016021
Lal15g0398 1254 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1011 1247 IPR003439 GO:0005524
Lal15g0398 1254 SUPERFAMILY ABC transporter transmembrane region 678 992 IPR036640 GO:0005524|GO:0016021
Lal15g0398 1254 Gene3D - 1001 1254 IPR027417 -
Lal15g0398 1254 Gene3D - 366 615 IPR027417 -
Lal15g0398 1254 SUPERFAMILY ABC transporter transmembrane region 39 346 IPR036640 GO:0005524|GO:0016021
Lal15g0398 1254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1004 1249 IPR027417 -
Lal15g0398 1254 Pfam ABC transporter 395 543 IPR003439 GO:0005524
Lal15g0398 1254 Pfam ABC transporter 1030 1178 IPR003439 GO:0005524
Lal15g0398 1254 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 28 1251 IPR039421 -
Lal15g0398 1254 CDD ABC_MTABC3_MDL1_MDL2 376 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0398 Lal-Chr15 2700174 2709737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0398 54 636 Calmodulin-binding Proteins AT2G36910 39.255 7.36e-115 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0398 K05658 - gmx:100810688 2174.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0398 15 2700174 2709737 Lal15g0398 15 2700174 2709737 ECH