Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0396 ATGATGGACGGAGTTAATAGCGGTGGCGGTAACGGCGATGGTGGTACCCCGACACCGGCTCCGGCGCCGATTCCGAGCGCCAACACTCCGCCGCCGTTCCTGAGCAAGACGTACGACATGGTTGACGACCGTTCAACTGATTCTATCGTGTCGTGGAGCGCAACCAATAACAGCTTCGTGGTTTGGAACCCACCGGAATTCGCAAGAGACCTTTTGCCCAAACACTTCAAGCACAACAATTTCTCAAGCTTCGTTAGACAGTTAAATACCTATGGTTTCAGGAAGGTGGATCCAGATCGCTGGGAATTTGCGAATGAGGGCTTTTTAAGGGGTCAAAAGCACTTGCTTAGGAGTATAACTAGGAGAAAACCTGCCCATGGTCATAATAATCAACAAGCTCAGCAATCGCATGCACAGAGTTCATCATCAGTAGGGGCATGTGTAGAAGTTGGTAAGTTTGGGCTAGAGGAAGAGGTTGAGAGACTTAAAAGAGATAAGAACGTGCTCATGCAAGAACTTGTGAGGTTGAGGCAACAGCAACAAACCACTGATAACCAGCTGCAGTCTATGGTTCAGCGCCTTCAAGGAATGGAGCAACGACAGCAACAAATGATGTCATTCCTTGCAAAAGCTGTCCAGAGCCCTGGTTTCTTTGCTCAATTTGTACAACAGAAAAATGACAGCAACAAGCACATAACTGAAGTCAACAAAAAGCGTCGGCTCAAGCATGAAGGTATTTCTGAAACAGAGCATGCTGCTGCTGCTCCTGATGGACAAATTGTAAAATATAAACCTGTGATGAATGAAGCAGCAAAAGCAATGCTAAGGCAGATCATGGCGTGGGATACTTCTCGTGTAAAATCATTTAGTAAAAGCTCTGATAGTTACTTAATCGGTGATGGTTCACCGCCATCCAGTACATTGGACAGTAGCAGCTCTTCAAGCCGGGCTTCTGGAGTAACACTTCAAGAGGTTCCTCCACCTTCAATTCAGTCTTCTCACATTCCTGCTGCAAAGGGGATACAAGGACATGTCCCACCTGAAAATCTATCTTCAACACAAACTGCAACTTCTGAAAAAGTTACCAAGGTTGGAGTACCGGAGGCACCTTCTATCCGTGTTCCTCAAGCAGATGCGATTATGCCTGATCTTTCTCCAATAACAGGAAATATTCTTGATATTCCTGACGAAAATTTAATGTGCCCTGAGACAGGCAGCGAGACATTTATGGATCCTACTTCATTAGGGGCCAGCGAGTCATTTTCCATTGACTTCGATGGTATTCCACCTGATGCAGACATTGAAGATTTGTTAGGCAATCCTTCTATTTGGGATGATTTTTTGCAAACTCCAGTGTCAGAGGATATTGAAACTGATGTTGCTGAAGTGTCCGAAGGGAATGAGATGCAGCCAACTGGAAATGGATGGAACAGAACTGAACATTTGGATCAACTTACAGAGCAGATGGGAACTTCTTTTATCTGA 1485 0.4532 MMDGVNSGGGNGDGGTPTPAPAPIPSANTPPPFLSKTYDMVDDRSTDSIVSWSATNNSFVVWNPPEFARDLLPKHFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSITRRKPAHGHNNQQAQQSHAQSSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQSMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQKNDSNKHITEVNKKRRLKHEGISETEHAAAAPDGQIVKYKPVMNEAAKAMLRQIMAWDTSRVKSFSKSSDSYLIGDGSPPSSTLDSSSSSSRASGVTLQEVPPPSIQSSHIPAAKGIQGHVPPENLSSTQTATSEKVTKVGVPEAPSIRVPQADAIMPDLSPITGNILDIPDENLMCPETGSETFMDPTSLGASESFSIDFDGIPPDADIEDLLGNPSIWDDFLQTPVSEDIETDVAEVSEGNEMQPTGNGWNRTEHLDQLTEQMGTSFI 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0396 494 ProSitePatterns HSF-type DNA-binding domain signature. 72 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal15g0396 494 Gene3D - 26 123 IPR036388 -
Lal15g0396 494 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1 8 483 - -
Lal15g0396 494 SMART hsfneu3 29 122 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal15g0396 494 MobiDBLite consensus disorder prediction 124 143 - -
Lal15g0396 494 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 8 483 IPR027725 -
Lal15g0396 494 Pfam HSF-type DNA-binding 33 122 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal15g0396 494 SUPERFAMILY "Winged helix" DNA-binding domain 28 122 IPR036390 -
Lal15g0396 494 MobiDBLite consensus disorder prediction 125 143 - -
Lal15g0396 494 MobiDBLite consensus disorder prediction 292 363 - -
Lal15g0396 494 PRINTS Heat shock factor (HSF) domain signature 33 56 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal15g0396 494 PRINTS Heat shock factor (HSF) domain signature 71 83 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal15g0396 494 PRINTS Heat shock factor (HSF) domain signature 84 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal15g0396 494 MobiDBLite consensus disorder prediction 1 32 - -
Lal15g0396 494 Coils Coil 152 179 - -
Lal15g0396 494 MobiDBLite consensus disorder prediction 292 330 - -
Lal15g0396 494 MobiDBLite consensus disorder prediction 346 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0396 Lal-Chr15 2687623 2691611 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0396 5 490 HSF AT1G32330 53.082 2.82e-167 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lal15g0396 HSF_DNA-bind 2.8e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0396 K09419 - gmx:100794897 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0396 15 2687623 2691611 Lal15g0396 15 2687623 2691611 ECH