Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0393 ATGAGCTTTCAGGACATCGAATCTGGGAGGCCTTTCGCTTCACGGCGAAGCCTAATCAATGGTAAGCAGGACCCTACGCAAGCCGTAGCTTCTGGAATATTCCAGATCAACACCGCTGTTTCAACCTTCCAGAGACTTGTTAATACCCTTGGTACCCCTAAGGATACCCCTGAATTACGTGATAAGCTGCATAAGACGAGATTGCATATTGGACAATTGGTGAAGGATACTTCGGCTAAACTTAAGGAAGCTAGTGAAATCGATCATCATTCTAATGTCAATGCAAACAAGAAGATAGCAGACGCCAAGCTTGCAAAAGATTTTCAGGCAGTGTTGAAAGAATTTCAGAAGGCACAGCGTCTTGCATCTGAGAGGGAAACAGCTTACACTCCTTTTGTTCCACAAACAGCTCTTTCACCCAGCGAACTAGATGTTAGTTCTGATAAGCCTCCCGAACAGCGTGCCCTTCTCATGGAATCCAAAAGGCAGGAGGTATTGTTCCTAGATAATGAGATTGCCTTCAATGAGGCTATCATTGAGGAAAGAGAGCAAGGCATTGAAGAAATCCAGCAACAAATTGGTGAAGTAAATGAGATTTTCAAAGATCTTGCTGTGCTTGTCCATGAGCAAGGAACAATGATCGACGTCCTTGTGTTATATCAAGTTTTTTTTGGCCTGGACTGGTTCATGTTATTTGATGTCAAGAATTGCCATTTTGTAGATGATATTGGGTCCAACATCGAGAATTCCCATGTAGCAACTGCACAAGCAAAATCTCAACTTGCAAAAGCTTCGAAGACACAAAGATCAAATTCGTCTCTGGCATGCTTGCTTTTGGTGATATTCGGGATTGTGCTTCTAATTGTCATCATTGTGCTTGCTGCTTAG 888 0.4279 MSFQDIESGRPFASRRSLINGKQDPTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELRDKLHKTRLHIGQLVKDTSAKLKEASEIDHHSNVNANKKIADAKLAKDFQAVLKEFQKAQRLASERETAYTPFVPQTALSPSELDVSSDKPPEQRALLMESKRQEVLFLDNEIAFNEAIIEEREQGIEEIQQQIGEVNEIFKDLAVLVHEQGTMIDVLVLYQVFFGLDWFMLFDVKNCHFVDDIGSNIENSHVATAQAKSQLAKASKTQRSNSSLACLLLVIFGIVLLIVIIVLAA 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0393 295 SUPERFAMILY t-snare proteins 23 216 IPR010989 GO:0016020|GO:0016192
Lal15g0393 295 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 176 215 IPR000727 -
Lal15g0393 295 Gene3D - 20 133 - -
Lal15g0393 295 CDD SynN 23 137 IPR006011 GO:0016020
Lal15g0393 295 Gene3D - 177 217 - -
Lal15g0393 295 PANTHER SYNTAXIN 238 294 IPR045242 -
Lal15g0393 295 PANTHER SYNTAXIN 2 215 IPR045242 -
Lal15g0393 295 Gene3D - 234 295 - -
Lal15g0393 295 PANTHER SYNTAXIN OF PLANTS PROTEIN 2 215 - -
Lal15g0393 295 PANTHER SYNTAXIN OF PLANTS PROTEIN 238 294 - -
Lal15g0393 295 CDD SNARE_Qa 179 263 - -
Lal15g0393 295 SMART tSNARE_6 171 264 IPR000727 -
Lal15g0393 295 SMART SynN_4 14 127 IPR006011 GO:0016020
Lal15g0393 295 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Lal15g0393 295 Pfam SNARE domain 240 290 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0393 Lal-Chr15 2678178 2681671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0393 1 283 SNARE and Associated Proteins AT5G46860 70.671 2.84e-138 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0393 - K08488 gmx:547656 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0393 15 2678178 2681671 Lal15g0393 15 2678178 2681671 ECH
Lal15g0393 15 2678178 2681671 Lal23g1124 23 12784264 12788527 LSH