Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0370 ATGGGTCGGAAAAACGACGCCGTTTTGGACACCGAAGATTCCCCCAACAGCCCCAAACTTAATTCCGAGAAGAAGAAAAACAAAAAGAAGAACAAAAACAAAAACAACCTCCAAAATGAAACTACCACTCCCAAAAGAAAGCTCAACGACATCGACCTTCAACAAAACGACACCGAATCAACCAAGAACAAGAACAAGAAGAATAAGCACCACATGTCAACAGATACCGTGGACCAAGAAACCAAAGTCGATAACGGAAACGATAATGAAACGGTAACGGAACGGGTTGTGGTGGTTACTGGAAAGGATGTTGAAGATTCAAAATACGCGGCCGTTAAAACCTTCGCCGAATCAGGGATTCCTGAGAAGGTTCTAGAATGCTGCAAGGGTTTCAAGAACCCTTCTCCGATTCAATCGCGAGCTTGGCCTTTCTTATTGGACGGTCGTGATCTCATTGGAATTGCTGCAACTGGCTCAGGGAAGACGTTAGCTTTTGGAATACCAGCGATTATGCATATTATGAAGAAAGGGAAGAATAAATCGGCGAAGGGTCGGAAACCTCTTTGTTTGATGCTCTCTCCCACTAGGGAGCTAGCTCAACAAATATCAGACGTCATGTGCGATGCTGGTAGGTCTTGTGGTGTTGAATCAGTTTGTTTGTATGGTGGAACCTCCAAAGGGCCACAAATCTCATCACTGAAATCTGGCGTTGACATCGTCATTGGAACCCCTGGTCGTATACAAGATCTGATTGAAATGGGTGTCTTATCCCTAAACGAAGCATCTTTTGTGGTCCTTGACGAAGCAGATCGGATGCTTGACATGGGTTTTGAGCAAGTAGTTCGCTCCATCCTGGGTCAGACATGTTCTGTTCGTCAAATGGTAATGTTCAGTGCTACATGGCCTTTAGCAGTTCATCACTTAGCACAGGAGTTTATGGATCCTAACCCTGTAAAGTTGTTGGAGGAAGAGGTATTTAAACTTGTGACAGGCTCAGAAGATCTAGCTGCCAATCATGATGTCATGCAGATAGTTGAGGTGCTGGATGATCGTGCACGTGATAATCGACTTGTTGCTTTACTGGAAAAGTACCACAAATCTCAGAGGGGTTGGAAGGCTGTATCAATACATGGGGACAAAGCACAACATGCTCGTACAAAGGCACTATCATTATTCAATGTGGGAACCTGTCCTTTGATGATTGCTACTGATGTAGCTGCTCGGGGCTTGGACATCCCAGATGTTGAAGTGGTGATCAACTACAGTTTTCCACTAACCACAGAAGATTATGTTCATAGAATTGGGCGGACTGGACGTGCTGGTAAGAAAGGTGTTGCTCATACATTCTTCACACAGCAGAATAAGGGACTGGCTGGAGAGCTGGTGAATGTTTTAAGAGAAGCCGGGCAAACTGTACCTGAGGCCCTTATGAAATTTGGTACACATGTAAAGAAAAAGGAGTCTAAGCTTTATGGGGCCCACTTCAAAGAAATTGCTGCTGATGCTCCAAAGTCAACGAAAATCAAGTTTGACTCTGATGATGAAGACTAG 1551 0.4442 MGRKNDAVLDTEDSPNSPKLNSEKKKNKKKNKNKNNLQNETTTPKRKLNDIDLQQNDTESTKNKNKKNKHHMSTDTVDQETKVDNGNDNETVTERVVVVTGKDVEDSKYAAVKTFAESGIPEKVLECCKGFKNPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAIMHIMKKGKNKSAKGRKPLCLMLSPTRELAQQISDVMCDAGRSCGVESVCLYGGTSKGPQISSLKSGVDIVIGTPGRIQDLIEMGVLSLNEASFVVLDEADRMLDMGFEQVVRSILGQTCSVRQMVMFSATWPLAVHHLAQEFMDPNPVKLLEEEVFKLVTGSEDLAANHDVMQIVEVLDDRARDNRLVALLEKYHKSQRGWKAVSIHGDKAQHARTKALSLFNVGTCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQNKGLAGELVNVLREAGQTVPEALMKFGTHVKKKESKLYGAHFKEIAADAPKSTKIKFDSDDED 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0370 516 Pfam DEAD/DEAH box helicase 136 304 IPR011545 GO:0003676|GO:0005524
Lal15g0370 516 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 369 502 - -
Lal15g0370 516 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 17 369 - -
Lal15g0370 516 MobiDBLite consensus disorder prediction 1 89 - -
Lal15g0370 516 CDD SF2_C_DEAD 341 450 - -
Lal15g0370 516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 318 IPR027417 -
Lal15g0370 516 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 142 319 IPR014001 -
Lal15g0370 516 Coils Coil 20 40 - -
Lal15g0370 516 CDD DEADc 129 320 - -
Lal15g0370 516 Pfam Helicase conserved C-terminal domain 362 441 IPR001650 -
Lal15g0370 516 MobiDBLite consensus disorder prediction 45 89 - -
Lal15g0370 516 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 113 139 IPR014014 GO:0003724
Lal15g0370 516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 473 IPR027417 -
Lal15g0370 516 SMART helicmild6 359 441 IPR001650 -
Lal15g0370 516 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 265 273 IPR000629 -
Lal15g0370 516 SMART ultradead3 130 344 IPR014001 -
Lal15g0370 516 PANTHER BNAA08G07020D PROTEIN 369 502 - -
Lal15g0370 516 PANTHER BNAA08G07020D PROTEIN 17 369 - -
Lal15g0370 516 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 334 480 IPR001650 -
Lal15g0370 516 Gene3D - 328 483 IPR027417 -
Lal15g0370 516 Gene3D - 16 320 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0370 Lal-Chr15 2498596 2504626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0370 112 449 Eukaryotic Initiation Factors Gene Family AT3G19760 33.520 3.34e-49 172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0370 15 2498596 2504626 Lal23g1143 23 12907916 12913180 LSH