Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0369 ATGGCAGCTTGTAGTGTCTACTCAACACAATCTCTCAACACGAGTTGCTTTATCTCAACCCCATCAAATACAAATCATGGCTTCCACCAAAAACAAGTTGTATTCTACACTACAAGCAAGAGAGGCACTAACACAGTTACCCCATATGTGATAAAATGTGCAGCAGGTAACTCACAAACAGTGGTGATTGGTCTGGCAGCTGACTCAGGGTGTGGGAAGAGTACTTTCATGAGGAGACTAACAAGTGTGTTTGGTGGAAAAGCTGAGCCACCAAAGGGTGGGAACCCTGATTCCAACACACTCATTAGTGACACCACCACAGTTATATGCTTGGATGATTATCATTCTTTGGATAGAACTGGTAGAAAAGAGAAGGGAGTCACTGCACTTGACCCTAGAGCCAATGATTTTGATCTCATGTATGAGCAAGTTAAGGCTATTAAGGATGGAATTTCTGTTCAAAAGCCTATTTACAACCATGTTAGTGGTCTCTTGGATCCTCCTGAGCTAATTAAACCTCCCAAAATCTTGGTCATTGAAGGTTTGCACCCAATGTATGATGCACGGGTCAGAGATCTCTTGGACTTTAGCATCTACTTAGATATTAGCAATGAAGTCAAATTCGCTTGGAAAATTCAGAGAGACATGGCGGAACGTGGACACAGTCTTGAAAGCATCAAGGCTAGCATTGAAGCAAGGAAGCCTGATTTTGATGCTTATATTGATCCTCAAAAGCAATATGCAGATGCAGTAATAGAAGTGTTACCAACACAACTAATTCCAGATGATAATGAAGGGAAGATTCTAAGAGTGAGGTTGATACAGAAAGAAGGGGTTAAGAATTTCAGCCCAGTTTACTTGTTTGATGATGGCTCTACCATTTCATGGATACCATGTGGTAGGAAGCTTACATGTTCTTACCCTGGCATCAAATTTGCTTATGGACCGGATACTTACTTTGGAAATGAGGTATCAGTTGTGGAAATGGATGGAGAATTTGACAGATTAGATGAACTAATATATGTTGAGAGCCACCTAAGCAACCTGTCCTCAAAGTTCTATGGAGAGGTTACACAACAAATGTTAAAACATGCTGATTTCCCAGGTAGCAACAATGGGACAGGTCTGTTCCAAACCATAGTTGGTTTGAAGATAAGAGATTTATATGAGCAGTTAGTAGCTACCAGGGCTCAGACTCCAGTAAGATCATCTAAAGTTTAG 1221 0.4095 MAACSVYSTQSLNTSCFISTPSNTNHGFHQKQVVFYTTSKRGTNTVTPYVIKCAAGNSQTVVIGLAADSGCGKSTFMRRLTSVFGGKAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKAIKDGISVQKPIYNHVSGLLDPPELIKPPKILVIEGLHPMYDARVRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTQLIPDDNEGKILRVRLIQKEGVKNFSPVYLFDDGSTISWIPCGRKLTCSYPGIKFAYGPDTYFGNEVSVVEMDGEFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQLVATRAQTPVRSSKV 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0369 406 PANTHER PHOSPHORIBULOKINASE 6 405 - -
Lal15g0369 406 PANTHER URIDINE KINASE 6 405 - -
Lal15g0369 406 Pfam Phosphoribulokinase / Uridine kinase family 62 260 IPR006083 GO:0005524|GO:0016301
Lal15g0369 406 PRINTS Phosphoribulokinase family signature 67 84 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lal15g0369 406 PRINTS Phosphoribulokinase family signature 176 194 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lal15g0369 406 PRINTS Phosphoribulokinase family signature 211 228 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lal15g0369 406 PRINTS Phosphoribulokinase family signature 229 252 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lal15g0369 406 ProSitePatterns Phosphoribulokinase signature. 211 224 IPR006082 GO:0005524|GO:0005975|GO:0008974
Lal15g0369 406 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 330 IPR027417 -
Lal15g0369 406 Gene3D - 57 295 IPR027417 -
Lal15g0369 406 CDD PRK 62 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0369 Lal-Chr15 2494060 2497637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0369 114 288 PRT Gene Family AT3G27440 26.404 1.14e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0369 K00855 - gmx:100807126 737.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0369 15 2494060 2497637 Lal15g0369 15 2494060 2497637 ECH
Lal16g0426 16 2582327 2585800 Lal15g0369 15 2494060 2497637 LSH