Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0357 ATGGCGGTGAATCTGACTAGTGGTGCGATAACGGCGATGTGCAGCGACGATTCCTCTACCTCTTCAGAGGATTTGAAACCAGTGCTTCAGGTCATCGATTTGAAGCAAGTTCAGTCGCAGCAAAACGCTGCCACCGAGAGATTCCGTCTCGTGCTTTCTGATGGTTCACTTTACCAACAAGGGATGCTCGCTACGCAGAAGAACGACTTGGTTCGTTCTGGAAGGTTGCAGAAGGGTTCTGTTGTTAAACTCACTCAATTCATCTGTAACGTTGTCCAGGAACGCAAGATTATTATCATCATTGAGCTAGATGTGGTACTTGAAAAATGTGATCTGATTGGAGAACCTGTCGCTGCACCAAGAAGTATACCTGCACGACCATCCACTGGTCAACCAGGAGTCACTGCTAAACCAAATGTGGTTGGTCCACCTGTCGATCACCCAAAAGTAAGCTATCCTACCAGTACTGCTGAGCCTGTAAGATATGGTGCCTCAAATGCCCCTACCACTTATTCTAAAGTAGAGCCTGGAATCACTCTACCTAGATCAACGTCATATAATGGCTCTTCTGGTGATCAAAACATGAGTTTCCGTGGTCCACAATCAGAGGCTTCAAGACACATGCAAAACTCTTATGCTCGTCCACCTCAACCTATGTACCGACAGCCACCTCCAGTGTACCATAACCGGGGCCCTATGGCAAGAAATGAAGCTCCCCCAAGGATAATTCCAATATCCGGATTGAATCCATACCAGAATACGTGGACAATTAAAGCTAGAGTAACAGCTAAGGGAGAACTGAGGCACTATAATAATGCCAGAGGTGATGGCAAAGTATTTTCTTTTGATCTTCTTGATTCTGACGGGGGAGAGATTCGGGCAACTTGCTTTAATGCTGTGGCTGATCAGTTCTATAGTGTAATTGAAGCTGGTAAAGTCTATCTGATTTCCAGGGGAACTGTAAAGCCAGCTCAAAAGAATTTTAATCACCTCAATAATGATCAAGAGCTGACCCTTGATATCACTTCAATTATACAGCCATGCCCTGAAGATGATAGCTCAATTCCAAAGCAGACTTTTAATTTCCGCCCCATTATTGAATTTGAAAGATTGGAGAATAACAGCATTGCTGATGTTATTGGTGTGGTGTGTTCTGTAAGTCCTACAGCTTCAATCATGAGAAAAAATGGAACTGAAACTCAGAAGAGAACTCTCCAGTTGAAAGACATGTCAGACCGAAGTATTGAATTAACTTTGTGGGGAAACTTCTGCAATTCAGAGGGGCAAAGGCTGCAAGATATTTGTGATTCTGGGGCATTTCCAATTTTGGCCGTCAAAGCTGCTAGAGTGAACGAGTTCAGTGGGAAGTCTGTCGGGACCATAAACACTAGCCAGCTATTTGTGGAGCCTGAATTTCCTGAGGCTTATAGACTGAAAGAATGGTTTGAAAAGGAAGGGAGGAATGTTCCAACTATTTCTCTTTCCAAAGAAGCAGCTAGTTTCGGTAGAACTGATGCGCGGAAGACTATATCTCAGATTAAGGATGAGAAGTTAGGGACTTCAGAGAAACCTGATTGGATATCTGTGTGTGCAAGTGTTTCATTCGTTAAGGTTGATAATTTCTGCTACACAGCTTGTCCTATCATGATAGGAGACAGGCAATGCAACAAAAAAGTGACTAATAATGGAGATGGGAAATGGCGTTGTGACAGGTGTGACCAGTCTGTTGATGCCTGTGACTATAGGTACATACTGCAATTCCAGATACAGGATCACACTGGCCTAACATGGGTCACTGCTTTCCAGGAGTGTGGTGAAGAGATCATGGGTATAGCTGCGAAAGATTTATATTATCTGAAATTTGAAGAACAAGACGATGAAAAATTTGCAGAAATCATCCGTAAGGTTCTCTTCACCAAATATGTGTTTAAGTTAAAAGTAAAGGAGGAGACATTCAGTGATGAACAGCGTGTCAAGTCAACAGCAGTAAAAGCAGACAAGTTGAACTTTGCATCTGAGTCTAGGTTTCTTTTGGATTTGATTGAAAAACTCAAGGTTGAGAAAGCAGAAGGTACCAATCCTAATTCTCTAATGAATAATGTTGGACTAGGAAACATTGGAACTGGACAAGCTAGGCCAGCAGTTTACAATAATCCTACAATGAGCACCACTAATGGCAGTAGAGATTATGGGATGGCAGCAAATCAAGTGGGTCAGTATGGAAACCAATATAATAACAGCTCTTATGCTTCAGCAGTGGCTCCTGGTTCATATATGTCATCATGTAACAACTGTGGGGGTTCTGGTCATAGCTCTGCACAATGCCCACATATTGCGAATCGACCTGGACAGTCTGTGGGAGGGGCCTATTCTAATCGGGTACCTGCAGCTGCAGCTGGATCAGGTGGTGTCTCTGGTGAATGCTTTAAATGCCATCAAACTGGTCATTGGGCCAAAGACTGTCCTGGCTTCAGTGCAGCTCCAGCGTATGGTACCAGTAATGTAGTGCAACAAGGAAGATATGGGATTCCTCAGAAGCAACAATATGGAGGATATTGA 2559 0.4342 MAVNLTSGAITAMCSDDSSTSSEDLKPVLQVIDLKQVQSQQNAATERFRLVLSDGSLYQQGMLATQKNDLVRSGRLQKGSVVKLTQFICNVVQERKIIIIIELDVVLEKCDLIGEPVAAPRSIPARPSTGQPGVTAKPNVVGPPVDHPKVSYPTSTAEPVRYGASNAPTTYSKVEPGITLPRSTSYNGSSGDQNMSFRGPQSEASRHMQNSYARPPQPMYRQPPPVYHNRGPMARNEAPPRIIPISGLNPYQNTWTIKARVTAKGELRHYNNARGDGKVFSFDLLDSDGGEIRATCFNAVADQFYSVIEAGKVYLISRGTVKPAQKNFNHLNNDQELTLDITSIIQPCPEDDSSIPKQTFNFRPIIEFERLENNSIADVIGVVCSVSPTASIMRKNGTETQKRTLQLKDMSDRSIELTLWGNFCNSEGQRLQDICDSGAFPILAVKAARVNEFSGKSVGTINTSQLFVEPEFPEAYRLKEWFEKEGRNVPTISLSKEAASFGRTDARKTISQIKDEKLGTSEKPDWISVCASVSFVKVDNFCYTACPIMIGDRQCNKKVTNNGDGKWRCDRCDQSVDACDYRYILQFQIQDHTGLTWVTAFQECGEEIMGIAAKDLYYLKFEEQDDEKFAEIIRKVLFTKYVFKLKVKEETFSDEQRVKSTAVKADKLNFASESRFLLDLIEKLKVEKAEGTNPNSLMNNVGLGNIGTGQARPAVYNNPTMSTTNGSRDYGMAANQVGQYGNQYNNSSYASAVAPGSYMSSCNNCGGSGHSSAQCPHIANRPGQSVGGAYSNRVPAAAAGSGGVSGECFKCHQTGHWAKDCPGFSAAPAYGTSNVVQQGRYGIPQKQQYGGY 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0357 852 Gene3D - 493 684 IPR012340 -
Lal15g0357 852 ProSiteProfiles Zinc finger CCHC-type profile. 762 776 IPR001878 GO:0003676|GO:0008270
Lal15g0357 852 MobiDBLite consensus disorder prediction 123 146 - -
Lal15g0357 852 SUPERFAMILY Nucleic acid-binding proteins 360 489 IPR012340 -
Lal15g0357 852 Gene3D - 758 827 - -
Lal15g0357 852 Gene3D - 3 119 IPR012340 -
Lal15g0357 852 SUPERFAMILY Nucleic acid-binding proteins 241 354 IPR012340 -
Lal15g0357 852 CDD RPA1N 8 106 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lal15g0357 852 CDD RPA1_DBD_A 244 346 - -
Lal15g0357 852 SMART c2hcfinal6 807 823 IPR001878 GO:0003676|GO:0008270
Lal15g0357 852 SMART c2hcfinal6 761 777 IPR001878 GO:0003676|GO:0008270
Lal15g0357 852 MobiDBLite consensus disorder prediction 173 216 - -
Lal15g0357 852 CDD RPA1_DBD_C 510 683 IPR013955 -
Lal15g0357 852 PANTHER REPLICATION PROTEIN A SUBUNIT 3 709 - -
Lal15g0357 852 CDD RPA1_DBD_B 376 483 - -
Lal15g0357 852 SUPERFAMILY Nucleic acid-binding proteins 1 114 IPR012340 -
Lal15g0357 852 Pfam Replication factor-A protein 1, N-terminal domain 5 107 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lal15g0357 852 Pfam Replication protein A OB domain 366 468 IPR031657 -
Lal15g0357 852 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 216 683 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lal15g0357 852 MobiDBLite consensus disorder prediction 173 220 - -
Lal15g0357 852 Pfam Zinc knuckle 761 777 IPR001878 GO:0003676|GO:0008270
Lal15g0357 852 Pfam Zinc knuckle 807 822 IPR001878 GO:0003676|GO:0008270
Lal15g0357 852 PANTHER REPLICATION FACTOR A 1, RFA1 3 709 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lal15g0357 852 SUPERFAMILY Nucleic acid-binding proteins 507 684 IPR012340 -
Lal15g0357 852 SUPERFAMILY Retrovirus zinc finger-like domains 802 824 IPR036875 GO:0003676|GO:0008270
Lal15g0357 852 Pfam Replication factor-A C terminal domain 526 677 IPR013955 -
Lal15g0357 852 Gene3D - 354 492 IPR012340 -
Lal15g0357 852 Gene3D - 241 350 IPR012340 -
Lal15g0357 852 Pfam OB-fold nucleic acid binding domain 255 344 IPR004365 GO:0003676
Lal15g0357 852 ProSiteProfiles Zinc finger CCHC-type profile. 808 822 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0357 Lal-Chr15 2401403 2405349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0357 1 788 Core DNA Replication Machinery Family AT5G45400 51.564 0.0 855
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0357 K07466 - gmx:100778597 1156.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0357 15 2401403 2405349 Lal15g0357 15 2401403 2405349 ECH