LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal15g0357	ATGGCGGTGAATCTGACTAGTGGTGCGATAACGGCGATGTGCAGCGACGATTCCTCTACCTCTTCAGAGGATTTGAAACCAGTGCTTCAGGTCATCGATTTGAAGCAAGTTCAGTCGCAGCAAAACGCTGCCACCGAGAGATTCCGTCTCGTGCTTTCTGATGGTTCACTTTACCAACAAGGGATGCTCGCTACGCAGAAGAACGACTTGGTTCGTTCTGGAAGGTTGCAGAAGGGTTCTGTTGTTAAACTCACTCAATTCATCTGTAACGTTGTCCAGGAACGCAAGATTATTATCATCATTGAGCTAGATGTGGTACTTGAAAAATGTGATCTGATTGGAGAACCTGTCGCTGCACCAAGAAGTATACCTGCACGACCATCCACTGGTCAACCAGGAGTCACTGCTAAACCAAATGTGGTTGGTCCACCTGTCGATCACCCAAAAGTAAGCTATCCTACCAGTACTGCTGAGCCTGTAAGATATGGTGCCTCAAATGCCCCTACCACTTATTCTAAAGTAGAGCCTGGAATCACTCTACCTAGATCAACGTCATATAATGGCTCTTCTGGTGATCAAAACATGAGTTTCCGTGGTCCACAATCAGAGGCTTCAAGACACATGCAAAACTCTTATGCTCGTCCACCTCAACCTATGTACCGACAGCCACCTCCAGTGTACCATAACCGGGGCCCTATGGCAAGAAATGAAGCTCCCCCAAGGATAATTCCAATATCCGGATTGAATCCATACCAGAATACGTGGACAATTAAAGCTAGAGTAACAGCTAAGGGAGAACTGAGGCACTATAATAATGCCAGAGGTGATGGCAAAGTATTTTCTTTTGATCTTCTTGATTCTGACGGGGGAGAGATTCGGGCAACTTGCTTTAATGCTGTGGCTGATCAGTTCTATAGTGTAATTGAAGCTGGTAAAGTCTATCTGATTTCCAGGGGAACTGTAAAGCCAGCTCAAAAGAATTTTAATCACCTCAATAATGATCAAGAGCTGACCCTTGATATCACTTCAATTATACAGCCATGCCCTGAAGATGATAGCTCAATTCCAAAGCAGACTTTTAATTTCCGCCCCATTATTGAATTTGAAAGATTGGAGAATAACAGCATTGCTGATGTTATTGGTGTGGTGTGTTCTGTAAGTCCTACAGCTTCAATCATGAGAAAAAATGGAACTGAAACTCAGAAGAGAACTCTCCAGTTGAAAGACATGTCAGACCGAAGTATTGAATTAACTTTGTGGGGAAACTTCTGCAATTCAGAGGGGCAAAGGCTGCAAGATATTTGTGATTCTGGGGCATTTCCAATTTTGGCCGTCAAAGCTGCTAGAGTGAACGAGTTCAGTGGGAAGTCTGTCGGGACCATAAACACTAGCCAGCTATTTGTGGAGCCTGAATTTCCTGAGGCTTATAGACTGAAAGAATGGTTTGAAAAGGAAGGGAGGAATGTTCCAACTATTTCTCTTTCCAAAGAAGCAGCTAGTTTCGGTAGAACTGATGCGCGGAAGACTATATCTCAGATTAAGGATGAGAAGTTAGGGACTTCAGAGAAACCTGATTGGATATCTGTGTGTGCAAGTGTTTCATTCGTTAAGGTTGATAATTTCTGCTACACAGCTTGTCCTATCATGATAGGAGACAGGCAATGCAACAAAAAAGTGACTAATAATGGAGATGGGAAATGGCGTTGTGACAGGTGTGACCAGTCTGTTGATGCCTGTGACTATAGGTACATACTGCAATTCCAGATACAGGATCACACTGGCCTAACATGGGTCACTGCTTTCCAGGAGTGTGGTGAAGAGATCATGGGTATAGCTGCGAAAGATTTATATTATCTGAAATTTGAAGAACAAGACGATGAAAAATTTGCAGAAATCATCCGTAAGGTTCTCTTCACCAAATATGTGTTTAAGTTAAAAGTAAAGGAGGAGACATTCAGTGATGAACAGCGTGTCAAGTCAACAGCAGTAAAAGCAGACAAGTTGAACTTTGCATCTGAGTCTAGGTTTCTTTTGGATTTGATTGAAAAACTCAAGGTTGAGAAAGCAGAAGGTACCAATCCTAATTCTCTAATGAATAATGTTGGACTAGGAAACATTGGAACTGGACAAGCTAGGCCAGCAGTTTACAATAATCCTACAATGAGCACCACTAATGGCAGTAGAGATTATGGGATGGCAGCAAATCAAGTGGGTCAGTATGGAAACCAATATAATAACAGCTCTTATGCTTCAGCAGTGGCTCCTGGTTCATATATGTCATCATGTAACAACTGTGGGGGTTCTGGTCATAGCTCTGCACAATGCCCACATATTGCGAATCGACCTGGACAGTCTGTGGGAGGGGCCTATTCTAATCGGGTACCTGCAGCTGCAGCTGGATCAGGTGGTGTCTCTGGTGAATGCTTTAAATGCCATCAAACTGGTCATTGGGCCAAAGACTGTCCTGGCTTCAGTGCAGCTCCAGCGTATGGTACCAGTAATGTAGTGCAACAAGGAAGATATGGGATTCCTCAGAAGCAACAATATGGAGGATATTGA	2559	0.4342	MAVNLTSGAITAMCSDDSSTSSEDLKPVLQVIDLKQVQSQQNAATERFRLVLSDGSLYQQGMLATQKNDLVRSGRLQKGSVVKLTQFICNVVQERKIIIIIELDVVLEKCDLIGEPVAAPRSIPARPSTGQPGVTAKPNVVGPPVDHPKVSYPTSTAEPVRYGASNAPTTYSKVEPGITLPRSTSYNGSSGDQNMSFRGPQSEASRHMQNSYARPPQPMYRQPPPVYHNRGPMARNEAPPRIIPISGLNPYQNTWTIKARVTAKGELRHYNNARGDGKVFSFDLLDSDGGEIRATCFNAVADQFYSVIEAGKVYLISRGTVKPAQKNFNHLNNDQELTLDITSIIQPCPEDDSSIPKQTFNFRPIIEFERLENNSIADVIGVVCSVSPTASIMRKNGTETQKRTLQLKDMSDRSIELTLWGNFCNSEGQRLQDICDSGAFPILAVKAARVNEFSGKSVGTINTSQLFVEPEFPEAYRLKEWFEKEGRNVPTISLSKEAASFGRTDARKTISQIKDEKLGTSEKPDWISVCASVSFVKVDNFCYTACPIMIGDRQCNKKVTNNGDGKWRCDRCDQSVDACDYRYILQFQIQDHTGLTWVTAFQECGEEIMGIAAKDLYYLKFEEQDDEKFAEIIRKVLFTKYVFKLKVKEETFSDEQRVKSTAVKADKLNFASESRFLLDLIEKLKVEKAEGTNPNSLMNNVGLGNIGTGQARPAVYNNPTMSTTNGSRDYGMAANQVGQYGNQYNNSSYASAVAPGSYMSSCNNCGGSGHSSAQCPHIANRPGQSVGGAYSNRVPAAAAGSGGVSGECFKCHQTGHWAKDCPGFSAAPAYGTSNVVQQGRYGIPQKQQYGGY	852

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal15g0357	852	Gene3D	-	493	684	IPR012340	-
	Lal15g0357	852	ProSiteProfiles	Zinc finger CCHC-type profile.	762	776	IPR001878	GO:0003676\|GO:0008270
	Lal15g0357	852	MobiDBLite	consensus disorder prediction	123	146	-	-
	Lal15g0357	852	SUPERFAMILY	Nucleic acid-binding proteins	360	489	IPR012340	-
	Lal15g0357	852	Gene3D	-	758	827	-	-
	Lal15g0357	852	Gene3D	-	3	119	IPR012340	-
	Lal15g0357	852	SUPERFAMILY	Nucleic acid-binding proteins	241	354	IPR012340	-
	Lal15g0357	852	CDD	RPA1N	8	106	IPR007199	GO:0003677\|GO:0005634\|GO:0006260
	Lal15g0357	852	CDD	RPA1_DBD_A	244	346	-	-
	Lal15g0357	852	SMART	c2hcfinal6	807	823	IPR001878	GO:0003676\|GO:0008270

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal15g0357	Lal-Chr15	2401403	2405349	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal15g0357	1	788	Core DNA Replication Machinery Family	AT5G45400	51.564	0.0	855

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal15g0357	K07466		-	gmx:100778597	1156.35

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal15g0357	15	2401403	2405349	Lal15g0357	15	2401403	2405349	ECH

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