Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0349 ATGTCCCTTCTCAGCAGATTCTTCTACAAGAGACCCCCTGATGGGTTACTCGAATTCATCGACAGAGTCTATGTTTTCGATTCTTGCTTCTGCACTGAAGTATTACCTGAAGGAATGTACCAACTCTACCTTCATGAAATCATCACTGAGTTGTATGAAGAGTTTCCAGAATCTTCTTTTCTCGCCTTTAATTTTCACGAAGGTGAGAAACGAAGCCAATTCGCTGAAATTTTAGCTGAGTTCGATGTAACCGTGATGGATTATCCGAAACAGTACGAGGGTGTTCCAATTTTGCCCCTGTCTCTGGTTCAGCATTTTCTTAGGGTTTGTGAGAGTTGGATTTCACTTGGGCACCCTCAAAATATGATTTTGTTCCATTGTGAGAGAGGGGGTTGGCCCCTTTTGGCGTTTTTGCTTTCAAGTTTATTAATTTTCAGAAGGGTTCATAGTGGTGAACGTAAAACCCTTGATATGGTTCATAGAGAGGCACCAAAGGGTTTGTTGCAATTGTTGTCACCTTTTAACCCTTTGCCTTCTCAGCTTCGTTATCTTCAGTATGTGTCTAGAAGGAACATAACACCAGAGTGGCCGCCGCCGGAACGTGCTTTGTCGCTGGATTGTGTCATTCTAAGAGCAATTCCTAGTTTTGATGTGCAGGATGGGTGTAGACCAATGATTAGGATTTTTGGTAGGAATTTGCTTAGTAAAGGTGGGCTGAAAACTCATATGATCTATTCCATGCTCAATAAAAAGAAGTCATTGAAGCATTACCGTCAGGCTGACTGCGATGTGATTAAGATTGACATTCAATGTTTTGTGCAAGGAGATGTGGTGTTGGAGTGTGTCCATATGGATTTAGATCTAGAGCGAGAAGTGATGATGTTTCGTATAATGTTCAACACAGCATTTATTCGCTCCAACATATTGATGTTGGATGCTGAAAATTTGGACATTCTGTGGGATTCGAAGGAGCGGTATCCAAAAGGCTTCCGGGCTGAGGTTTTGTTTGGGGATGTTGAAAGCATAAGTCCTACAAGGGCTCCAACAGCCATATTAAACGGCGAGGAGAAGGGTGGATTGCCACTTGAAGCATTTTCAATGGTTCAAGAACTTTTTAATGGTGCAGAATGGGATGAAAGTGGTGATGCTGCCGCCTGGCTGCTTCGACAGCTTAGTGTCTTAAATGATGTCAAAGAGTTATCAAAGTTGCAAGGCAGAGGAAGTTGGTATTCGTCACCTACTGACTCTGATGATGAAAATAATGAGTCAAGCACTGCTGATAGTTCAGATGATACCTTTGATGTTATTTCTTCTTCTTCTGATCCTTCAAAATTATTGACATCTGACATATATGATTCAGCCCATTTAGCTTTTGATAGGGATGGTGGAAATCATGCAAGTCTCACCTCAAGAACACTTGATCAGTCATTGATTGATAATGTTTCATCACCTCATTATGCTCCAAGTAAGGAATACTCTCTTCGTTCAATTCCACCATCACTTTCACCAGTTCCTGCTACTCAATCTCGCCTTCCATCATCATCACAAGCACCACCACCTCCGCCTCCACCTCCACCATTCTCTAATAAGGAGCCTTCTCTAACCTTGTCTAATAATGCACCACCTCCTCCTCCTCCTCCACCACCTCCACCACCTTTGCCTCATTCATCAACTACTAACCAAAAAACCTTACCATCACCACCGCCACCTCTACCATCGATGGGTCACAATATTAGCAAGGCTTCTAAAATGCCTCCACCTCTGCCACCCTCTCCTCTAGGTCGTAACATTAATAATGCTACTATCCCGACTCCACCCCCACCCCCTCCAAGACCTCTGCAACCAAGTTCAGCTCCCCCACCTCCGCCTCCGCCACCTCCTTCTGTAAGTCGTATTGCCATCAGTGCTCCTACTCCACCCCCACCTCCACCTCCGCCACCTCCTTCTATAAGTCGTGTTGCCAACAGTGCTCCTACTCCACCCCCACCTCCTCCAAGACCTATACAACCAGGTTCAGCTCCCCCACCTCCACCTCCGCCACCTCCTTCTATAAGCCGTGTTGCCAACAGTGCTCCAACTCCACCCCCACCTCCTCCAAGACCTATGCAACCAGGTTCAGCTCCCCCACCTCCACCTCCACCTCCGCCACCTCCTTCTATAAGTCGTGTTGCCAACAGTGCTCCTACTCCACCCCCACCTCCTCCAAGACCTGTAAGCACAGGTTCAGCCCCTCTCCATGGATATAGAAAAACAGGGTCAGCCCCACCGCCTGCGCCCCCACCTCCCCCAGGATCTCGACAAACAAATTCACCCCCACCACCTCCACCTCCTCCAAGTATAAGAATTGGTTCAGCTCCACCACCTCCACCTCCTCCAGATATAAGAATTGGTTCAGCTCCACCAACTCCACCTCCTCCAGGTATAAGAATTGGTTCAGCTCCACCACCTCCACCTCCTCCAGGTATAAGAACTGGTTCAGCTCCACCACCTCCACCTCCTCCAGGTATAAGAATTGGTTCTGCTCCACCACCTCCACCTCCTCCAGGTATAAGAATTGGTTCAGCTCCACCACCTCCACCTCCAGCCCCTACAGGACCTAAGCGAATGGGTTCAGCTCCACCTCCTCCACCACCAGCACCAAGGCCTCCAGGTGGTCCTCCTCCACCACCTGGTCGTGGTGCAATGCCAGTGCCACCACCTCCACCTGCAGGAAGGGCCCCTGGTGTGCCACCACCAGGCAAAACTTCTTTAGCACCTACAAATGTTGGAAAAGGTCGTGGTATTGGTGGGATTGCTGTTGCTCCTAAAAGAACCTTGTTAAAGCCCCTGCACTGGGTGAAAGTTGCTCGAGCAGCAAAAGGGAGTCTATGGGCAGATTCACATAAACAAGATAATGAATCAAGGGCCCCTGAAATAGATATATCGGAACTTGAGACCCTGTTTTCAGCAGTATCTATTTCTGATGGGAGCAGTACTAAAGGTGGAGGTCGACGTGGTACTAACATCAACAAACCTGTAAAAGTACAATTGGTTGACTTACGTAGAGCATATAATTGTGAAATTATGCTCTCTAAAATCAAAATTCCTTTGCAAGATATGCTTAATGCAGTTCTGGCACTGGATTCTTCTGTTCTGGATATTGATCAGGTTGAGAATCTGATCAAATTCTGTCCCACAAAGGAAGAGATGGAGATGTTGAAGAATTATACAGGGAACAAGGAAATGCTTGGGAAATGTGAACAGTTTTTTATGGAGCTGATGAAGGTTCCACGGGTAGAAGCCAAGTTAAGGGTGTTTGCTTTCAAAACGACATTTTCTTCTCAGGTGAAAGATTTAAGGGTAAATTTGAATACAATCAATGATGCAACCAGAGAGGTGAAAGAATCTGTAAAATTGCGTCAAATAATGCAGACTATTCTTACTCTGGGCAATGCCTTGAATCAGGGAACAGCACGGGGATCAGCAGTGGGATTCAAATTGGATAGCCTTCTTAAATTATCTGATACTCGTGCAAGAAATAATAAAATGACGTTAATGCATTATCTGTGTAAGCTTCTGGCTGAGAAAATGGTAGAGTTGGTAGATTTTGACAAGGATCTTGTCCATTTGGAAGCAGCTTCTAGGATCCAACTAAAAGCATTGGCCGAAGAAATGCAAGCTGTGAGTAAAGGTTTAGAGAAAGTTGAGCAAGAACTCACTATTTCTGAAAATGATGGTGCTATATCTACAGGATTCCGTACCGTACTGAAGAATTTTCTTGATATTGCGGAAGCTGATGTAAGGTCACTTATATCATTGTATGCCGAAGTGGGAAGAAATGCAGATTCTTTGTCCCAGTACTTTGGGGAGGATCCAGCTAGGTGCCCCTTTGAACAAGTGACTCAAATCCTTGTTGTCTTTGTCAAGATGTTCAAGAAGTCAAGGGAGGAGAATGAGAGGCTAGCAGATGCTGAAAAAAAGAGATTAGAGAGAGAAGCCATGAAGGAAAAGACAGCGAATAACACGAATTCCAAGAAGACGGCATTCGATAGAAATACTAAAACAAGCTAG 4050 0.4548 MSLLSRFFYKRPPDGLLEFIDRVYVFDSCFCTEVLPEGMYQLYLHEIITELYEEFPESSFLAFNFHEGEKRSQFAEILAEFDVTVMDYPKQYEGVPILPLSLVQHFLRVCESWISLGHPQNMILFHCERGGWPLLAFLLSSLLIFRRVHSGERKTLDMVHREAPKGLLQLLSPFNPLPSQLRYLQYVSRRNITPEWPPPERALSLDCVILRAIPSFDVQDGCRPMIRIFGRNLLSKGGLKTHMIYSMLNKKKSLKHYRQADCDVIKIDIQCFVQGDVVLECVHMDLDLEREVMMFRIMFNTAFIRSNILMLDAENLDILWDSKERYPKGFRAEVLFGDVESISPTRAPTAILNGEEKGGLPLEAFSMVQELFNGAEWDESGDAAAWLLRQLSVLNDVKELSKLQGRGSWYSSPTDSDDENNESSTADSSDDTFDVISSSSDPSKLLTSDIYDSAHLAFDRDGGNHASLTSRTLDQSLIDNVSSPHYAPSKEYSLRSIPPSLSPVPATQSRLPSSSQAPPPPPPPPPFSNKEPSLTLSNNAPPPPPPPPPPPPLPHSSTTNQKTLPSPPPPLPSMGHNISKASKMPPPLPPSPLGRNINNATIPTPPPPPPRPLQPSSAPPPPPPPPPSVSRIAISAPTPPPPPPPPPPSISRVANSAPTPPPPPPRPIQPGSAPPPPPPPPPSISRVANSAPTPPPPPPRPMQPGSAPPPPPPPPPPPSISRVANSAPTPPPPPPRPVSTGSAPLHGYRKTGSAPPPAPPPPPGSRQTNSPPPPPPPPSIRIGSAPPPPPPPDIRIGSAPPTPPPPGIRIGSAPPPPPPPGIRTGSAPPPPPPPGIRIGSAPPPPPPPGIRIGSAPPPPPPAPTGPKRMGSAPPPPPPAPRPPGGPPPPPGRGAMPVPPPPPAGRAPGVPPPGKTSLAPTNVGKGRGIGGIAVAPKRTLLKPLHWVKVARAAKGSLWADSHKQDNESRAPEIDISELETLFSAVSISDGSSTKGGGRRGTNINKPVKVQLVDLRRAYNCEIMLSKIKIPLQDMLNAVLALDSSVLDIDQVENLIKFCPTKEEMEMLKNYTGNKEMLGKCEQFFMELMKVPRVEAKLRVFAFKTTFSSQVKDLRVNLNTINDATREVKESVKLRQIMQTILTLGNALNQGTARGSAVGFKLDSLLKLSDTRARNNKMTLMHYLCKLLAEKMVELVDFDKDLVHLEAASRIQLKALAEEMQAVSKGLEKVEQELTISENDGAISTGFRTVLKNFLDIAEADVRSLISLYAEVGRNADSLSQYFGEDPARCPFEQVTQILVVFVKMFKKSREENERLADAEKKRLEREAMKEKTANNTNSKKTAFDRNTKTS 1349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0349 1349 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 338 IPR035892 -
Lal15g0349 1349 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1007 1334 - -
Lal15g0349 1349 SMART PTEN_C2_2 198 1058 IPR014020 -
Lal15g0349 1349 MobiDBLite consensus disorder prediction 426 441 - -
Lal15g0349 1349 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Lal15g0349 1349 MobiDBLite consensus disorder prediction 405 419 - -
Lal15g0349 1349 MobiDBLite consensus disorder prediction 1312 1349 - -
Lal15g0349 1349 Coils Coil 1211 1231 - -
Lal15g0349 1349 MobiDBLite consensus disorder prediction 753 914 - -
Lal15g0349 1349 Pfam C2 domain of PTEN tumour-suppressor protein 199 337 IPR014020 -
Lal15g0349 1349 SMART it6_source 561 1349 IPR015425 -
Lal15g0349 1349 MobiDBLite consensus disorder prediction 514 530 - -
Lal15g0349 1349 MobiDBLite consensus disorder prediction 487 927 - -
Lal15g0349 1349 Gene3D Protein tyrosine phosphatase superfamily 16 192 IPR029021 -
Lal15g0349 1349 Gene3D Formin, FH2 domain 932 1315 IPR042201 -
Lal15g0349 1349 Coils Coil 1305 1325 - -
Lal15g0349 1349 Pfam Formin Homology 2 Domain 935 1305 IPR015425 -
Lal15g0349 1349 ProSiteProfiles Formin homology-2 (FH2) domain profile. 930 1330 IPR015425 -
Lal15g0349 1349 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 19 188 IPR029021 -
Lal15g0349 1349 MobiDBLite consensus disorder prediction 537 556 - -
Lal15g0349 1349 Gene3D - 197 342 - -
Lal15g0349 1349 MobiDBLite consensus disorder prediction 405 441 - -
Lal15g0349 1349 MobiDBLite consensus disorder prediction 601 740 - -
Lal15g0349 1349 MobiDBLite consensus disorder prediction 1312 1332 - -
Lal15g0349 1349 PANTHER FORMIN-J 843 1338 - -
Lal15g0349 1349 PANTHER FORMIN-J 1 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0349 Lal-Chr15 2359859 2369270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0349 1 436 FH2 protein (formin) Gene Family AT1G31810 73.455 0.0 725
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0349 - - lang:109333182 1055.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0349 15 2359859 2369270 Lal15g0349 15 2359859 2369270 ECH
Lal16g0403 16 2432367 2441161 Lal15g0349 15 2359859 2369270 LSH
Lal15g0349 15 2359859 2369270 Lal23g1156 23 13005387 13015046 LSH