Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0346 ATGGAAAGCAACGACATATTGGAGGAGCTTCTTAACATCGATGTCGAGATTGAAGATGTCCAAGATCAAATAAGGGTTTTAATTGAGAGGCAAGAAAAGTTGTACGAGAGAAAATCTGAGCTGAGTGCAATTCTTGAAGCTTGTAAAGATTCTGAGAATGAGGTTAATAATAATGGGTCTGGGTCTGTTGAAAATTGGAGTGCTCCATTTGAATGGGATTCTCAAGCAGATGATCTCAGGTTCAATATTTTTGGCATTTCATCCTACCGTGCAAACCAAAGAGAGATAATTAATGCCATCATGAGTGGAAGAGATGTTCTGGTGATTATGGCTGCAGGTGGTGGCAAGAGCCTTTGCTACCAGCTTCCTGCTGTTCTCCGTGATGGAATTGCACTTATTGTCAGTCCATTGCTTTCCTTAATTCAAGATCAGGTAATGGGTTTGACTGCTCTGGGCATTCCAGCATATATGTTGACATCAACAACAAGTAAGGACAATGAGAAATTCATATACAAAGCTCTGGAGAAGGGCGAGGGGGAACTAAAAGTATTGTATGTCACTCCGGAAAAGATATCAAAAAGCAAGAGGTTTATGTCAAAACTTGAAAAATGCAATCACGCTGGTCGCCTCTCTCTAATTTCAATTGATGAGGCACATTGCTGTAGTCAGTGGGGCCATGACTTTCGACCTGATTATAAGAACCTTGGTATTCTCAAAACTCAGTTTCCTAATGTCCCTATGGTTGCTTTGACTGCAACTGCTACTCAGAGGGTCCAAAATGATTTGATGGAGATGTTACGTATTCCTAGATGTGTCAAATTTGTCAGCTCAGTCAATAGGCCAAACTTGTTTTATATGGTAAAGGAAAAGTCATCTGTTGGTAAGGTCGTTATTGATGAAATTGCTGAATTCATTCAAGAATCTTATCCAAATAACGAATCAGGGATTGTTTATTGCTTCTCTCGGAAGGAATGTGAGCAGGTTGCAAAGGAGTTACGGGACAGAGGAGTTTCAGCTGATTATTATCATGCTGATATGGATGTAAATGCTCGGGAAAAAGTACATATGCGGTGGAGCAATAACAAGCTGAAGGTCATTGTTGGTACAGTTGCATTTGGTATGGGAATCAATAAACCAGATGTCAGGTTTGTCATCCATCACAGCTTGAGTAAATCAATGGAAACATACTATCAGGAAAGTGGTCGAGCTGGCCGAGATGGACTTCCTTCTGAATGCCTTCTATACTTTAGACCTGGTGATGTTCCCCGGCAGAGTTCAATGGTCTTCTACGAAAATTCAGGATTGCAGAATCTATACGACATAGTACGATATTGTCAGTCCAAAAAACAATGCCGACGAAATGCCTTTTTCCGGCATTTTGCTGAGCCACTTCAAGACTGCAACGGAATGTGCGACAACTGTGCATTCTCAAGTGAGGTGAAGGAAGTGGATGTCACTCGCCATGCTAAACTGATGGTTTCATTGTTGCAAGATATGCAAGCAAATGGTCAGAGGTCTACAATGTTGCAATTAGTCGAGAAGATGAAAGTAAAGCAAAAGGAATTAGGTGCTGAGTTGAAACGAGAGGAAATTGAGCAGCTCATCTTGCAGCTTTTATTGGAGCGTGCTTTGAAAGAAGAATATCAGCATACCCCTTATGCCACAAATGCTTACATTGCTATAGGGCCATTGGCCAAGCAAATATCACAAGGGAAGAGGACTGTGAAGCTTGAGATTTATAGTGAACAGAAAACTAAGGCTGGAGTAAGAGTAGCGAAATGTAGCCTTGGGTCCTCTGGTTTGGAGCTAAAGCTTGACGAGCTGAGGAAAGAACTGTCTTCCATTCATGGAGGAATACTCCCACACTCTGTCTTGTCCACTCAACAAATTAGCTTATTAAGTTCTCAAAAACCAAACTCAATAGAACAGGCAAGACTTTTATTGTGCAACTTGTTGGAGAAGGTAATTGGAAAATTGAAGAGTGAAAAATATGGAAATAGGATACTTGAGCAGATTGAAAAATATGCTGATTTTAAGCTGTCTGATGAACAAGGAACTGATGGTAGAGCTCCAAAGAGGTTGAAGACCAAGAAGAACCTTGTTCTTATTGAGAGTAGTGAAGATGAAGCATGA 2133 0.4079 MESNDILEELLNIDVEIEDVQDQIRVLIERQEKLYERKSELSAILEACKDSENEVNNNGSGSVENWSAPFEWDSQADDLRFNIFGISSYRANQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLRDGIALIVSPLLSLIQDQVMGLTALGIPAYMLTSTTSKDNEKFIYKALEKGEGELKVLYVTPEKISKSKRFMSKLEKCNHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPMVALTATATQRVQNDLMEMLRIPRCVKFVSSVNRPNLFYMVKEKSSVGKVVIDEIAEFIQESYPNNESGIVYCFSRKECEQVAKELRDRGVSADYYHADMDVNAREKVHMRWSNNKLKVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDVPRQSSMVFYENSGLQNLYDIVRYCQSKKQCRRNAFFRHFAEPLQDCNGMCDNCAFSSEVKEVDVTRHAKLMVSLLQDMQANGQRSTMLQLVEKMKVKQKELGAELKREEIEQLILQLLLERALKEEYQHTPYATNAYIAIGPLAKQISQGKRTVKLEIYSEQKTKAGVRVAKCSLGSSGLELKLDELRKELSSIHGGILPHSVLSTQQISLLSSQKPNSIEQARLLLCNLLEKVIGKLKSEKYGNRILEQIEKYADFKLSDEQGTDGRAPKRLKTKKNLVLIESSEDEA 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0346 710 SMART RQC_2 484 581 IPR018982 GO:0006260|GO:0006281|GO:0043138
Lal15g0346 710 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 297 446 IPR001650 -
Lal15g0346 710 Coils Coil 17 37 - -
Lal15g0346 710 Gene3D HRDC domain 599 677 IPR044876 -
Lal15g0346 710 Coils Coil 512 532 - -
Lal15g0346 710 Pfam RQC domain 481 585 IPR018982 GO:0006260|GO:0006281|GO:0043138
Lal15g0346 710 CDD SF2_C_RecQ 280 416 - -
Lal15g0346 710 PANTHER DNA HELICASE RECQ FAMILY MEMBER 7 682 - -
Lal15g0346 710 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 423 IPR027417 -
Lal15g0346 710 Pfam RecQ zinc-binding 419 475 IPR032284 -
Lal15g0346 710 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 82 504 IPR004589 GO:0004386|GO:0006310
Lal15g0346 710 Gene3D - 480 580 IPR036388 -
Lal15g0346 710 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Lal15g0346 710 SMART helicmild6 326 407 IPR001650 -
Lal15g0346 710 Pfam DEAD/DEAH box helicase 91 259 IPR011545 GO:0003676|GO:0005524
Lal15g0346 710 SMART ultradead3 85 288 IPR014001 -
Lal15g0346 710 Gene3D - 280 476 IPR027417 -
Lal15g0346 710 PANTHER ATP-DEPENDENT DNA HELICASE Q1 7 682 - -
Lal15g0346 710 Gene3D - 45 279 IPR027417 -
Lal15g0346 710 CDD DEXHc_RecQ1 71 279 - -
Lal15g0346 710 Pfam Helicase conserved C-terminal domain 303 406 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0346 Lal-Chr15 2333299 2343292 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0346 84 421 Eukaryotic Initiation Factors Gene Family AT3G19760 19.198 1.73e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0346 K10899 - gmx:100817635 1160.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0346 15 2333299 2343292 Lal15g0346 15 2333299 2343292 ECH