Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0340 ATGAAGGAACCATCATCAAAATCAAAGCCATGGAGGCCATTCACAGCAAATTGTTGTTCAAGTGAAGACCAAACAATCTTTAGGAACTTCAGCAGGTGCAAGACCTCACGTTCTGATTTTTCTAAGAACATTGCTCCTTTACCATCATTTAGGAGGCTTTCTTTCTCTGATCTTAGCCGTTCATCTTCCATAAGAATCAATGAGGATATTGCACAGTCTTTTGGTCCTGATTTGTATGATTTTCAGCTTAGTGAACTACGTGCCATCACACAGAATTTTTCAAGCAATTTCTTGCTTGGTGAAGGTGGGTTTGGAACTGTGCATAAGGGTTATATTGATGATAACTTGAGGCAGGGTTTAAAGGCTCAACCTGTTGCTGTTAAACTTCTTGATATTGAAGGTTTACAAGGACACCGTGAATGGCTTGCAGAAGTGATATTTCTTGGGCAGCTAAGACACCTCAACTTGGTTAAATTGATTGGTTATTGTTGTGAGGATGAAGAAAGGCTACTTGTCTACGAATTCATGCCAAGAGGAAGTTTGGAGAATCATTTGTTCAGAAGGCTAACATCACTGCCTTGGGCAACAAGACTAAAAATTGCAATAGGTGCTGCTAAAGGCCTTTCCTTCTTGCATGGAGCTCAGAAACCAGTCATTTATAGAGACTTCAAGACTTCTAATGTCTTGCTTGATTCAGACTTCACAGCAAAATTGTCAGATTTTGGACTGGCAAAAATGGGGCCCGAGGGATCAAAATCACATGTTACAACCAGAGTTATGGGCACCTATGGATATGCAGCCCCAGAATACATCTCAACAGGGCACTTGACCACAAAAAGTGATGTCTACAGCTTCGGGGTAGTCCTGCTAGAACTACTAACAGGAAGGAGAGCTATGGAAAAGGCAAGACCAAAGGCTGAGCAAAACCTTGTAGATTGGTCAAAACCATACTTGAATAGCAGTAGGAGGTTGAGGTACATTATGGATCCAAGGCTTGCAGGCCAATATTCTGTAAAGGGTTCAAAGGAAATGGCCCTTTTGGCATTGCAAAGCATAAGTTTGAGTCCTAAAGACAGACCAAGAATGGCAACCATTGTTGAAACTCTTGAAAGCCTGCAACAGTTCAAGGACATGGCAGTTACCAGTGGACACTGGCCAGCAGCACCAAAATCTACTAGAAATGGAGCTTCCAATAAGGTGAAAATCAGAGCTGTTGCAAATCAAAAGCAACCATCTCCCCAAGTTCCTAGCAAAAAAACATGA 1263 0.4181 MKEPSSKSKPWRPFTANCCSSEDQTIFRNFSRCKTSRSDFSKNIAPLPSFRRLSFSDLSRSSSIRINEDIAQSFGPDLYDFQLSELRAITQNFSSNFLLGEGGFGTVHKGYIDDNLRQGLKAQPVAVKLLDIEGLQGHREWLAEVIFLGQLRHLNLVKLIGYCCEDEERLLVYEFMPRGSLENHLFRRLTSLPWATRLKIAIGAAKGLSFLHGAQKPVIYRDFKTSNVLLDSDFTAKLSDFGLAKMGPEGSKSHVTTRVMGTYGYAAPEYISTGHLTTKSDVYSFGVVLLELLTGRRAMEKARPKAEQNLVDWSKPYLNSSRRLRYIMDPRLAGQYSVKGSKEMALLALQSISLSPKDRPRMATIVETLESLQQFKDMAVTSGHWPAAPKSTRNGASNKVKIRAVANQKQPSPQVPSKKT 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0340 420 ProSiteProfiles Protein kinase domain profile. 93 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal15g0340 420 SUPERFAMILY Protein kinase-like (PK-like) 75 370 IPR011009 -
Lal15g0340 420 Gene3D Phosphorylase Kinase; domain 1 56 175 - -
Lal15g0340 420 Gene3D Transferase(Phosphotransferase) domain 1 176 384 - -
Lal15g0340 420 ProSitePatterns Protein kinases ATP-binding region signature. 99 128 IPR017441 GO:0005524
Lal15g0340 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Lal15g0340 420 Pfam Protein tyrosine and serine/threonine kinase 99 369 IPR001245 GO:0004672|GO:0006468
Lal15g0340 420 PANTHER OS01G0588500 PROTEIN-RELATED 31 397 - -
Lal15g0340 420 PANTHER SERINE/THREONINE-PROTEIN KINASE, ACTIVE SITE PROTEIN-RELATED 31 397 - -
Lal15g0340 420 CDD STKc_IRAK 99 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0340 Lal-Chr15 2296752 2299622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0340 81 406 Glycoside Hydrolase AT3G07070 48.358 1.54e-101 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lal15g0340 PK_Tyr_Ser-Thr 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0340 - - lang:109333209 782.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0340 15 2296752 2299622 Lal15g0340 15 2296752 2299622 ECH