Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0336 ATGGGGTCCAGTGGCAGCAAAGCCACTTCATCTTGTAGTTCATCGTCGTGTTCTGAAAGTTTTCAGAGGGGTCGATCTAAAAGGTATAGAGGGTTTCAATCTTATTGTCTAGGAACAACATCTGGATCTCATGATAATGACGAGGTTTGTGAGCAGAATAAAGTAAATGGAAGTGATGTTACATACACCAGGGGCAAGGAAATAGACTCAGATGAAGTGAAAATAGATTCTTTTAGAAAGGTTAAATCTGATAAAATGTCTTGCATTCCTCCTAACCTCAACCTTGATGAGTGGGGTGACAGTGCATCCAGAACCGGCAGCAGCTCTGCACATGCTTCTTCAACTCAGTCCTTGAACCCTTCAAGTCGGTTCTTTTCTCGCTTTAGCCTCATTCCTGGTAATATAAGCTTCAGACTTAGCAGAACTACCAGTTTGGGGTCATCAAGGCATTGTCCTGTTTCTTCTGCAAGCCCCTCAGTATTTAACAATGAAGGTGAGCATAATCTGCATCCAGATACCTTGATTAATAGAAATGGACCTCAACAAGGTAGTGACCCACTTAACGCATCATTTGTTAATCAAGTTCCTATACAGTATCATGAAGATGCTTCTAATAATTTAAGATCTATCGCCTCAGCAGTGGGTTCGCCTCGCAACTTGCAGAGAAGTCCGGCAATTTATCCTATCCAGGATGTGGTTACAGATGGAGATGGTACAAGAGAAGTGCTGGATTTGGACTTGTTTGCTCCAAGAATTCATAATGAGTCTGAAAATTTTGAGACTAGACATACTAATAGACGGAATGGAGTTCGAGAACATGTTGAACGTAATGTTAGTTTCAGCAGAACATTAAGTGTTGGAAGGCTTCGTGACAGAGTTCTCCGCCGATCAACATTATCTGATTTCACCTTTTGCCCTTTGCAACAAGAGAGAGAAGTGAGAGATGCTCATCAGGATAATGGAAGACAAGTCGGGGAGAGAGATACAAGAGTTTCGCCATCTGGAAATCTTCCATCCACTATGTCTAGCTCCCTGTTTACCTTCCAAGACTATGAGGTTGAAACTTCACGATCAAGAGGAACTAGGTATCAGGATCTACTGGAACATAGGTCCAATTTCCTTGAACGGCGAAGAAGAATACGGTCCCAGGTTCATGCTCTTCAGAGGTTGGGTGGCCGGTTTGAAAATCTTTCTGGACATGAAAGATCATGTATCTTGTCCGGTCAGCATAGAAATGGTCATTGTGCATGCCGAATCAGCAGTCACGAACCAAGTACCAATTCGAATGATGATACTAATGCTAGAGCTAGTATATCAAGAATTGTTATGTTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTGGTTTTATCTTCCCGTCCGTCCGTGTCTTCTATTGGATCTGTTCCAGCACCCAATGAAGCTGTGGAATCCTTGCCTGTTAAATTATACACAAAGTTGAACAAACATCAAGAAGATGATGCACAATGTTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCATGAGAATACTTCCTTGCCGCCATGAATTTCACAGAACATGTATAGACAAGTGGCTGACAGAGGTTCACAGGGTATGCCCACTATGTCGCGGCGACATATGTATATCTGATTCATTGTCAATGGAAAACTAA 1674 0.4223 MGSSGSKATSSCSSSSCSESFQRGRSKRYRGFQSYCLGTTSGSHDNDEVCEQNKVNGSDVTYTRGKEIDSDEVKIDSFRKVKSDKMSCIPPNLNLDEWGDSASRTGSSSAHASSTQSLNPSSRFFSRFSLIPGNISFRLSRTTSLGSSRHCPVSSASPSVFNNEGEHNLHPDTLINRNGPQQGSDPLNASFVNQVPIQYHEDASNNLRSIASAVGSPRNLQRSPAIYPIQDVVTDGDGTREVLDLDLFAPRIHNESENFETRHTNRRNGVREHVERNVSFSRTLSVGRLRDRVLRRSTLSDFTFCPLQQEREVRDAHQDNGRQVGERDTRVSPSGNLPSTMSSSLFTFQDYEVETSRSRGTRYQDLLEHRSNFLERRRRIRSQVHALQRLGGRFENLSGHERSCILSGQHRNGHCACRISSHEPSTNSNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPNEAVESLPVKLYTKLNKHQEDDAQCYICLVEYEDGDSMRILPCRHEFHRTCIDKWLTEVHRVCPLCRGDICISDSLSMEN 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0336 557 SMART ring_2 502 543 IPR001841 -
Lal15g0336 557 SUPERFAMILY RING/U-box 490 550 - -
Lal15g0336 557 MobiDBLite consensus disorder prediction 99 119 - -
Lal15g0336 557 ProSiteProfiles Zinc finger RING-type profile. 502 544 IPR001841 -
Lal15g0336 557 MobiDBLite consensus disorder prediction 327 343 - -
Lal15g0336 557 Pfam Ring finger domain 501 544 IPR001841 -
Lal15g0336 557 MobiDBLite consensus disorder prediction 1 26 - -
Lal15g0336 557 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 465 548 IPR013083 -
Lal15g0336 557 MobiDBLite consensus disorder prediction 313 343 - -
Lal15g0336 557 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 557 - -
Lal15g0336 557 MobiDBLite consensus disorder prediction 1 22 - -
Lal15g0336 557 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0336 Lal-Chr15 2272418 2277081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0336 223 551 C3H Transcription Factor Family AT5G45290 59.347 1.68e-112 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0336 - - lang:109332924 985.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0336 15 2272418 2277081 Lal15g0336 15 2272418 2277081 ECH
Lal15g0336 15 2272418 2277081 Lal23g1166 23 13058437 13066195 LSH