Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0311 ATGGGTGATTCAAAAGAAAATGAGGAAATTGGCCAGGGCATGCCAATGGCTGTGGATGAAAGTCAGCAGTTGGTTGATGCAGAGGTTCAAGTTCAGCCCGGAGTACGTTCGTCTAATGATGCTTTAAACCATGTTGAAAATGGGAAGGCGGATCCACGAGCTGAGGATCAGGTCGAAACTGGAAAGGCAGAGCCACCTGCTGAGGAATGTAGTGAGAAACCAGTAAATGCTGAGTCACTTGATGAGGATAAAAGCGTGAATCCATGGAAGGCAGAGCCACCTACCGAGGATGAAATTGAGCAACCAGTAAAAGCAGAGCTGCATATTGAGGATAAAAGTGTGAATCCAGGGAAGAAAGAGCTAGCTGATGAGGACAATAGTGTGAAACCAGGGAAGGTAGAGGTACCTGCTGAGGATAATCATGTGGAGCCAGAGGCTGTTTTAGGGGGCATTAGAGAACAAGTTTTTAAATATACCCTTTGCTCGGCCCCAGTTGAATTTGATGCTCAGATTTCAAATAGAATTGAGGCTAAAGAAGCTTCTAATGCGGAGATGAAAGCTGAAGAATTTTCTCAGAGTACTATGGACATCAAGAATGATGATAATAGTTGTCAGAATAATGTTGATGCTGCTGAAACAGCATTGAAGGTGAAGCCTAAAGCTTGTGAAGTGGCTGATAGTAAAATTTGTGGTAATGTGGACAGCATAGCCTCAAGTTGTGATGAGCCTAATACTCCACAAGCTGTCCCTGCTGATGCAAAAGCTGAGATCAAGAATGAGCTACAAGTTGCGAATAAGGCTGAAGAAAAGCAAGTTGTTGAACCTGCAGACAATAGCAACTCAAACTCAAAGCAGATATCTTTCTTGAATGCTGATCATTGTTATGATGGTAATGAGTCAGGAACGGATGAGGAGCAATCACTTTTTTTGAAGGAACTTGAAAATTTCTTCAGGGAAAGGAGCATAGAATTCAAACCTCCCAAGTTCTATGGAGAAGGACTCAATTGCCTTAAGTTATGGAGAGCTGTAGCAAGATTGGGTGGCTATGATAAGGTAACCTCGTGTAAGTTATGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCCAAGACATGCACCACAGTTTCATGGACTTTTCGTGGATTTTATGAGAAGGTGCTTCTTGATTACGAAAGGCATAAAATAAATGATGGGGAGCTGAATGTGCCTATTGCTGCTTCTCACCCAGAGCCTGTGAATATTGAAAATCAGGCTTCCACATCAGGTAGAGCGCGGAGAGACGCTGCAGCGCGAGCTATGCAGGGTTGGCATTCACAACGTCTACTAGGCAATGGAGAAGTTAGTGACCCTATAATTAAGGATAGGAATTCTGCTTCTATGCAGAAACGTGAAAAGCAGCTTAAGAGCATCAATTTACTTAAACGCAAGAAGCCATCTTACATGGATAATGCAGCCAAAGCGTCTCGTAGTAAACCATCTAAACCACAATTGGACACAGCCGTGGTTGATGTTGGACCTCCTGCTGACTGGGTAAAAATCAATGTGCAAAAAACTAAAGATTGTTTTGAGGTGTACGCTTTAGTTCCCGGTCTTCTGCGGGAAGAGGTGCGTGTTCAATCAGACCCAGCGGGACGCCTAGTCATAAGTGGTGAGCCTGAGCATCCTAATAACCCTTGGGGCGTGACACCTTTCAAAAAGGTTGTCAGCTTGCCTTCAAGAATTGATCCTCATCAGACATCTGCTGTCGTGACACTGCATGGACAGTTGTTTGTTCGAGTCCCGTTCGAGCAAGCCGAATAG 1797 0.443 MGDSKENEEIGQGMPMAVDESQQLVDAEVQVQPGVRSSNDALNHVENGKADPRAEDQVETGKAEPPAEECSEKPVNAESLDEDKSVNPWKAEPPTEDEIEQPVKAELHIEDKSVNPGKKELADEDNSVKPGKVEVPAEDNHVEPEAVLGGIREQVFKYTLCSAPVEFDAQISNRIEAKEASNAEMKAEEFSQSTMDIKNDDNSCQNNVDAAETALKVKPKACEVADSKICGNVDSIASSCDEPNTPQAVPADAKAEIKNELQVANKAEEKQVVEPADNSNSNSKQISFLNADHCYDGNESGTDEEQSLFLKELENFFRERSIEFKPPKFYGEGLNCLKLWRAVARLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKVLLDYERHKINDGELNVPIAASHPEPVNIENQASTSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRNSASMQKREKQLKSINLLKRKKPSYMDNAAKASRSKPSKPQLDTAVVDVGPPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQAE 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0311 598 SMART bright_3 304 395 IPR001606 GO:0003677
Lal15g0311 598 MobiDBLite consensus disorder prediction 477 497 - -
Lal15g0311 598 Gene3D - 303 401 IPR036431 GO:0003677
Lal15g0311 598 MobiDBLite consensus disorder prediction 25 44 - -
Lal15g0311 598 Pfam Hsp20/alpha crystallin family 515 596 IPR002068 -
Lal15g0311 598 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 67 597 IPR045147 GO:0006357
Lal15g0311 598 Gene3D - 491 598 IPR008978 -
Lal15g0311 598 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 67 597 - -
Lal15g0311 598 CDD ARID 305 390 - -
Lal15g0311 598 ProSiteProfiles ARID domain profile. 303 394 IPR001606 GO:0003677
Lal15g0311 598 SUPERFAMILY ARID-like 298 398 IPR036431 GO:0003677
Lal15g0311 598 MobiDBLite consensus disorder prediction 46 141 - -
Lal15g0311 598 CDD ACD_sHsps-like 513 593 - -
Lal15g0311 598 SMART ARID_2 300 390 - -
Lal15g0311 598 Pfam ARID/BRIGHT DNA binding domain 306 390 IPR001606 GO:0003677
Lal15g0311 598 SUPERFAMILY HSP20-like chaperones 507 594 IPR008978 -
Lal15g0311 598 MobiDBLite consensus disorder prediction 1 145 - -
Lal15g0311 598 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 498 598 IPR002068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0311 Lal-Chr15 2074693 2082221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0311 298 596 ARID Transcription Factor Family AT1G76510 65.461 1.73e-130 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lal15g0311 HSP20 1.9e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0311 - - lang:109348972 857.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0311 15 2074693 2082221 Lal23g1182 23 13187642 13194182 LSH