Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0305 ATGACACGCGCTATTAGATTCCTCACTCACAAACTTACGGAGGTAGCAGAGGCTGCGCCGCCGCCGGAGGCGTTACAGCTGGAATCTGATTTCGTTGTTATCCTGGCGGCGCTGCTCTGCTCCTTAATATGCGTGGTGGGATTAATCGCCGTCGCACGGTGCGCGTGGCTCCGCCGAGTTCCTGTTGCCGGAAACTTGCCGTCGCAAGCTGTGGCGAATAAGGGACTGAAGAAAAAGGTGCTTCAATCGCTGCCGAAGTTCGCTTACGCTGAAAGCAACCCGAGCAAGTGGTTGGCGACACTGGAATGCGCGATTTGCCTCTCGGAGTTTGCCGGCGGCGACGAGATCCGGGTTCTCCCACAGTGCGGGCACGGATTCCATGTAGGATGCATAGACACGTGGCTTGGGTCGCACTCGTCCTGTCCTTCATGTCGGCAGGTCCTGGCAGTGGCAAGGTGTCAGAAGTGTGGCCGGTTCCCGGCGGTTGGCGGAGGAGGTGGCAGCGCAACCAACGGTGCGGCGGTTATTGAACCAGAGCTGAAGTTAAGAGAAGATGAAAATGTGGTTGCAAATAATAATGGCAGCGGTAGTAGTAACATGGTGGGACATCATAGCCCTAACAATAGCAGTAATTTTTTCCTGCCTTGA 648 0.5556 MTRAIRFLTHKLTEVAEAAPPPEALQLESDFVVILAALLCSLICVVGLIAVARCAWLRRVPVAGNLPSQAVANKGLKKKVLQSLPKFAYAESNPSKWLATLECAICLSEFAGGDEIRVLPQCGHGFHVGCIDTWLGSHSSCPSCRQVLAVARCQKCGRFPAVGGGGGSATNGAAVIEPELKLREDENVVANNNGSGSSNMVGHHSPNNSSNFFLP 215
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0305 215 MobiDBLite consensus disorder prediction 189 215 - -
Lal15g0305 215 SUPERFAMILY RING/U-box 81 150 - -
Lal15g0305 215 Pfam Ring finger domain 102 145 IPR001841 -
Lal15g0305 215 SMART FANCL_C_2 99 153 - -
Lal15g0305 215 CDD RING-H2_PA-TM-RING 102 145 - -
Lal15g0305 215 SMART ring_2 103 144 IPR001841 -
Lal15g0305 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 150 IPR013083 -
Lal15g0305 215 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Lal15g0305 215 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 169 - -
Lal15g0305 215 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 169 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lal15g0305 Lal-Chr15 2039303 2039950 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0305 13 187 C3H Transcription Factor Family AT1G76410 55.801 2.42e-61 188
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0305 - - vun:114170353 291.967
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0367 16 2211371 2212024 Lal15g0305 15 2039303 2039950 LSH
Lal15g0305 15 2039303 2039950 Lal23g1188 23 13239991 13240638 LSH
Lal15g0305 15 2039303 2039950 Lal15g1552 15 17531089 17531730 PCT
Lal15g0305 15 2039303 2039950 Lal16g1804 16 17148228 17148821 PCT
Lal15g1552 15 17531089 17531730 Lal15g0305 15 2039303 2039950 PCT
Lal16g1804 16 17148228 17148821 Lal15g0305 15 2039303 2039950 PCT