Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0303 ATGAGTTGTGGTGAGAGCAGCAAGGAGAATAGCATGGAGGATCAGAACGGTGATACATTGGGAAGCTTGAATCATAATATTGGCAAACCTCCTAGAGATCAATCATCTATGCGCCATTGCACCAGTTCTTCATGGCTTCTTGAATCGGAACCAGATATTAAGATTATAGGTTTGAAATCCACCAGTGAAGAGAAGTCAGAGTTTTCACCTATTTTGAGGTCTGGGAGCAGTTCTGAGAAAGGACCAAAGCAGTACATGGAAGATGAATTTATCTGTGTTGATATTCTCTGTGAACATGTTGGTTCAAGAACAGACATTCCTTCTCCAGCAGCATTTTATGGGGTATTTGATGGGCATGGTGGTATTGATGCGGCATCATTTGCCAAAAAGAACATCCTAAATTTTTTAATTGAGGACTCTCAGTTCCCCACAGGCATTAAGAAAGCTGTTAAGAATGCATTTGTGAAGGTTGATCATGCAATTAAAGATGCTAGTGCTCTTGATAGTTCTTCAGGCACCACTGCTCTCATAGCCCTCTTGTTGGGAAGGGACATGCTAATTGCCAATGTAGGAGATTCTCGTGCCGTATTAGGCAAAAGGGGCAGAGCTATTGAACTTTCTAAAGACCATAAACCAAATTGCACTTCAGAAAGATTAAGAATTGAGAAACTAGGTGGTGTGATCTATGATGGATACCTCAATGGCCAACTATCGGTAGCTCGTGCTCTTGGAGATTGGCACATCAAAGGTTCTAAGGGTTCTAAGAGTCCTTTAAGCTCCGAGCCAGACCTGGAAGAGATTGTTGTGACAGAAGAAGATGAGTTTTTGATAATGGGTTGTGATGGATTATGGGATGTGATGAGTAGCCAATGTGCTGTAACAACGGTGAGGAGGGAACTCATGCAGCACAATGATCCTACAAAATGTGCAAAAGCACTTGTGACTGAGGCTCTTCAACGCAACACATGTGACAACCTAACAGTTGTTGTAGTTTGTTTCTCCAAAGATCCACCTCCTAAGATTGAAATTCCTAGATCACATAGGAGGAGGAGTATTTCAGCTGAAGGCATTGATCTTCTCAAAGGTGTCTTAAATGGTAGATGA 1104 0.4194 MSCGESSKENSMEDQNGDTLGSLNHNIGKPPRDQSSMRHCTSSSWLLESEPDIKIIGLKSTSEEKSEFSPILRSGSSSEKGPKQYMEDEFICVDILCEHVGSRTDIPSPAAFYGVFDGHGGIDAASFAKKNILNFLIEDSQFPTGIKKAVKNAFVKVDHAIKDASALDSSSGTTALIALLLGRDMLIANVGDSRAVLGKRGRAIELSKDHKPNCTSERLRIEKLGGVIYDGYLNGQLSVARALGDWHIKGSKGSKSPLSSEPDLEEIVVTEEDEFLIMGCDGLWDVMSSQCAVTTVRRELMQHNDPTKCAKALVTEALQRNTCDNLTVVVVCFSKDPPPKIEIPRSHRRRSISAEGIDLLKGVLNGR 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0303 367 SMART PP2C_4 63 331 IPR001932 -
Lal15g0303 367 ProSitePatterns PPM-type phosphatase domain signature. 112 120 IPR000222 GO:0043169
Lal15g0303 367 PANTHER PROTEIN PHOSPHATASE 2C 47-RELATED 9 355 - -
Lal15g0303 367 Gene3D - 57 337 IPR036457 -
Lal15g0303 367 ProSiteProfiles PPM-type phosphatase domain profile. 73 333 IPR001932 -
Lal15g0303 367 Pfam Protein phosphatase 2C 74 325 IPR001932 -
Lal15g0303 367 PANTHER PROTEIN PHOSPHATASE 2C 9 355 IPR015655 GO:0004722|GO:0006470
Lal15g0303 367 MobiDBLite consensus disorder prediction 1 44 - -
Lal15g0303 367 SUPERFAMILY PP2C-like 66 334 IPR036457 -
Lal15g0303 367 CDD PP2Cc 73 333 IPR001932 -
Lal15g0303 367 SMART PP2C_SIG_2 88 333 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0303 Lal-Chr15 2031007 2033026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0303 56 365 PP2C-type Phosphatase Gene Family AT3G51470 77.097 4.69e-179 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0303 K14803 - gmx:100786416 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0362 16 2179833 2182582 Lal15g0303 15 2031007 2033026 LSH
Lal15g0303 15 2031007 2033026 Lal23g1192 23 13258509 13266808 LSH