Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0300 ATGTCGTGTTCATCTTCATCTGGGTCGGAAGAAGATGATGAAGGATTTGATTCCTACCGGAAAGGAGGGTACCACGCCGTTAGGGTCGCCGATCAATTCGCCGGCGGCAGGTACATAGCGCAGAGGAAACTGGGTTGGGGTCAGTTCTCCACCGTGTGGCTTGCTTATGATATTCAAACATCTTCATATGTTGCTCTCAAGATCCAAAAAAGTGCAGCCGAGTTTGTTCAGGCAGCCATTCATGAAATCAATGTTCTCTCATCCATTACTAATGGTGATTCATCAAATTCGAGGTGCACTGTCCAATTGATTGATCATTTTAAGCACACAGGCCCAAATGGGCAGCACCTTTGCATGGTCCTTGAGTTTCTTGGTGATAACTTGCTCCGTTTGATCAAATATAACCATTACAAAGGCCTTCCATTGAGTAAAGTTCGGGCGGTTTGCAAATGCATTTTGATTGGCTTGGATTACTTGCATAGAGAACTTGGTATAATCCACACTGACCTAAAACCCGAAAACATTCTACTATTTTCAGCCATTGATCCTTCGAAAGACCCTATTAGGTCTGGAGTTTCCCCAATTCTAGAGAAGCCTGAGGGAAACATTAATGGTGGATTTACAAGTCTTATTGAGAAAAGATTGAAAATAAGAGCGAGGAGGGCAGTTGCTAAGATATCATTAAAAAGAGGTTCAATGGGAGGAATAGAAGAAGCTCCAAAGTTTGGTAGAAATATCGATGGGATTGATATGAGATGCAAGATAGTAGATTTTGGAAATGCATGTTGGGCTGATAAGCCGCTTGCAGAAGAAATACAGACAAGGCAGTACAGAGCTCCTGAAGTTATACTGAAGGCTGGCTATTCCTTCTCTGTCGACATGTGGTCTTTTGCGTGCATAGCTTTTGAGCTTGCCACTGGTGATGTGTTGTTTACACCCAAGGGTGGTGGACAAGGTTTTTGTGAGGATGAGGATCACCTTGCTCGGATGATGGAACTCCTTGGAAAGATTCCCCGGAAGATTGCTATTGCTGGAGCACAATCCAAGGATTTCTTTGACAGACATGGGGATCTAAAAAGGATTAGAAGGCTAAAATTTTGGCCACTTGACAAATTGCTAGTGGATAGATATAAGTTTACAGAGAAAGATGCTTGTGAGTTCTCGGAATTTCTTTTACCGCTTCTTGATTTTGCACCCGAGAAGCGACCAACTGCACAAAAGTGTCTGCAACACCCATGGCTGAACTGTAAGGAATCAACTCCAAATGAAACCATAAATGAATCTAGTGTGGGAAAGGTGAATATTGGTATGAGCAACCTTAAAATCAAGGTGGGAAAGTGA 1341 0.428 MSCSSSSGSEEDDEGFDSYRKGGYHAVRVADQFAGGRYIAQRKLGWGQFSTVWLAYDIQTSSYVALKIQKSAAEFVQAAIHEINVLSSITNGDSSNSRCTVQLIDHFKHTGPNGQHLCMVLEFLGDNLLRLIKYNHYKGLPLSKVRAVCKCILIGLDYLHRELGIIHTDLKPENILLFSAIDPSKDPIRSGVSPILEKPEGNINGGFTSLIEKRLKIRARRAVAKISLKRGSMGGIEEAPKFGRNIDGIDMRCKIVDFGNACWADKPLAEEIQTRQYRAPEVILKAGYSFSVDMWSFACIAFELATGDVLFTPKGGGQGFCEDEDHLARMMELLGKIPRKIAIAGAQSKDFFDRHGDLKRIRRLKFWPLDKLLVDRYKFTEKDACEFSEFLLPLLDFAPEKRPTAQKCLQHPWLNCKESTPNETINESSVGKVNIGMSNLKIKVGK 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0300 446 ProSiteProfiles Protein kinase domain profile. 38 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal15g0300 446 SMART serkin_6 38 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal15g0300 446 CDD STKc_SRPK 27 414 - -
Lal15g0300 446 Gene3D Transferase(Phosphotransferase) domain 1 92 414 - -
Lal15g0300 446 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 5 446 - -
Lal15g0300 446 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Lal15g0300 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Lal15g0300 446 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Lal15g0300 446 SUPERFAMILY Protein kinase-like (PK-like) 32 416 IPR011009 -
Lal15g0300 446 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 5 446 - -
Lal15g0300 446 Pfam Protein kinase domain 252 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal15g0300 446 Pfam Protein kinase domain 39 177 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0300 Lal-Chr15 2014692 2018983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0300 4 415 EF-hand Containing Proteins AT5G22840 50.000 2.13e-164 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Lal15g0300 Pkinase 2e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0300 K08832 - gmx:100811724 740.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0358 16 2165793 2170170 Lal15g0300 15 2014692 2018983 LSH
Lal15g0300 15 2014692 2018983 Lal23g0095 23 937333 941358 PCT
Lal23g0095 23 937333 941358 Lal15g0300 15 2014692 2018983 PCT