Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0295 ATGCCGAAAGCAAGTTCTGATGCCAAACCCGCCGATAGCCGGTTGAAGCGCAAGGGCGCTGGAACCGGGAGGAAGCAGACTAAGAAAGCTGCTAAAGATCCAAACAAGCCTAAGAGACCTCCAAGCGCTTTCTTCGTTTTCATGGCTGAGTTCAGAGAGGTGTTCAAGAAGGAAAATCCTAACAACAAATCTGTCGCCGCTGTCGGCAAAGCTTGCGGTGCAAAATGGAAGGAGATGAGTGATGCTGATAAAGCTCCATACGTTGCTAAGGCAGCGAAGAAGAAAGAAGAGTATGAGAAGACTCTTCGTGCCTACACCAATGGACTGTCTGCTGGCAAAGAGGAAGAGGAGTCTGATAAGTCAAAGTCTGAAGTGAATGATGATGAAGATGATGATGATGAGGAGGATGATGACGAGTAA 420 0.4762 MPKASSDAKPADSRLKRKGAGTGRKQTKKAAKDPNKPKRPPSAFFVFMAEFREVFKKENPNNKSVAAVGKACGAKWKEMSDADKAPYVAKAAKKKEEYEKTLRAYTNGLSAGKEEEESDKSKSEVNDDEDDDDEEDDDE 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0295 139 Gene3D High mobility group box domain 21 123 IPR036910 -
Lal15g0295 139 MobiDBLite consensus disorder prediction 1 41 - -
Lal15g0295 139 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Lal15g0295 139 MobiDBLite consensus disorder prediction 121 139 - -
Lal15g0295 139 Pfam HMG (high mobility group) box 37 105 IPR009071 -
Lal15g0295 139 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 3 136 - -
Lal15g0295 139 MobiDBLite consensus disorder prediction 104 139 - -
Lal15g0295 139 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 3 136 IPR031061 -
Lal15g0295 139 Coils Coil 88 108 - -
Lal15g0295 139 CDD HMGB-UBF_HMG-box 37 103 - -
Lal15g0295 139 SMART hmgende2 36 107 IPR009071 -
Lal15g0295 139 SUPERFAMILY HMG-box 24 107 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0295 Lal-Chr15 1970148 1971789 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lal15g0295 HMG_box 2.4e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0295 K25507 - gmx:100499992 159.073