Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0274 ATGGCCGACGAAGCTAAAGCCAAAGGCAACGCCGCTTTCTCTTCCGGCGATTACACAGCCGCTATCCGCCATTTCTCTGACGCCATCTCTCTATCCCCAACCAACCACGTCCTCTATTCAAATCGATCCGCCGCATACGCTTCCCTTCAAAACTACACCGAAGCCTTCACTGACGCCAAGAAGACCGTTGAGCTCAAGCCCGACTGGTCCAAAGGCTACAGCCGCCTCGGCGCCGCTCATATCGGTTTAGGTCAACACAGCGACGCCGTTTCGGCTTATAAGAAAGGTCTAGAAATTGATCCTAACAATGATGCCCTCAAATCCGGATTAGCAGATGCTCAGTCCGCCGCTTCCAGGTCCCGTTCGGGCCCACCGCCATCGGGAAGCCCATTCGGTGATGCTTTCTCCGGGCCCGAAATGTGGGCCAAGCTCACCGCTGACCCAGCCACTAGGATTTATCTTCAACAACCTGATTTCGTGAAGATGATGCAGGATATTCAGAAAGATCCGAGTAATTTGAACTTGTATTTGAAGGATCAAAGAGTCATGCGAGCTATTGGGGTTTTGCTCAATGTCAAGATTCAAAACGCTAATGATGACTTTGATATTCCTGAAGCTGAGACTGAGGCTGAGGCTTCTTCGTCTTCTCCGTTGCAATCGGAGAGGAAGAGAGCCGCTGAACCTGAACCGGAGCCTCAGCCGGAACCTATGGAAATACCGGATGAGGAGAAAGAGGTGAAGGAGAGGAAGGTTCAGTCTCAGAAGGAGAAGGAGGCTGGTAATGCTGCATACAAGAAGAAGAATTTCGATATCGCGATTCAGCATTACTCAAAGGCTTTGGAGTTGGATGATGAGGACATTTCATATCTCACTAATCGTGCTGCTGTTTACCTTGAGATGGGAAAGTATGAGGAATGCATGAAAGATTGTGACAAGGCCGTTGAAAGAGGAAGAGAACTAAGATCAGACTACAAAATGATTGCAAGAGCATTGACAAGGAAAGGAAATGCCTTAGTCAAATTGGCTAAATGCTCAAAGGATTATGATCCTGCCATTGAGACTTACCAAAAAGCACTTACAGAGCACCGCAATCCAGATACCTTGAAGAAACTGAATGAAGCTGAAAAGGCTAAGAAAGAACTAGAGCAGCAGGAATATTTTGATCCAAAATTGGCTGATGAGGAGAGAGAAAAAGGAAATGAATTCTTCAAGCAGCAGAAGTATCCCGAGGCTATCAAGCATTACACAGAGTCCTTAAGAAGAAACCCAAAAGATCCAAGGACTTACAGCAACAGAGCTGCATGCTACACTAAATTGGGGGCAATGCCTGAAGGTTTAAAGGATGCAGAAAAGTGCATTGAGCTTGATCCGACCTTCGTAAAGGGTTATACGAGGAAAGGTGCAGTACAGTTTTTCATGAAAGAACATGAGAAGGCTTTGGAAACATATAGGGAGGGGTTGAAACATGACCCTAACAACCAAGAGATGCTTGATGGGATTTCAAGATGTGTACAACAAATTAATAAGGCCAGCCGGGGGGATTTAAGTCCTGATGAATTGAAAGAGAGACAGGCCAAGGCAATGCAGGACCCTGAGATACAGAACATTCTCCAAGACCCTGTTATGAGACAGGTATTGGTTGATTTCCAAGAAAATCCCAAGGCTGCACAGGAACATACAAAGAACCCAATGGTGATGAATAAGATCCAAAAGCTGATCAGTGCTGGAATTGTTCAGATGAAATAA 1746 0.4605 MADEAKAKGNAAFSSGDYTAAIRHFSDAISLSPTNHVLYSNRSAAYASLQNYTEAFTDAKKTVELKPDWSKGYSRLGAAHIGLGQHSDAVSAYKKGLEIDPNNDALKSGLADAQSAASRSRSGPPPSGSPFGDAFSGPEMWAKLTADPATRIYLQQPDFVKMMQDIQKDPSNLNLYLKDQRVMRAIGVLLNVKIQNANDDFDIPEAETEAEASSSSPLQSERKRAAEPEPEPQPEPMEIPDEEKEVKERKVQSQKEKEAGNAAYKKKNFDIAIQHYSKALELDDEDISYLTNRAAVYLEMGKYEECMKDCDKAVERGRELRSDYKMIARALTRKGNALVKLAKCSKDYDPAIETYQKALTEHRNPDTLKKLNEAEKAKKELEQQEYFDPKLADEEREKGNEFFKQQKYPEAIKHYTESLRRNPKDPRTYSNRAACYTKLGAMPEGLKDAEKCIELDPTFVKGYTRKGAVQFFMKEHEKALETYREGLKHDPNNQEMLDGISRCVQQINKASRGDLSPDELKERQAKAMQDPEIQNILQDPVMRQVLVDFQENPKAAQEHTKNPMVMNKIQKLISAGIVQMK 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0274 581 Pfam Tetratricopeptide repeat 71 103 IPR001440 GO:0005515
Lal15g0274 581 Pfam TPR repeat 260 301 - -
Lal15g0274 581 Pfam TPR repeat 399 440 - -
Lal15g0274 581 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Lal15g0274 581 Pfam STI1 domain 138 191 IPR041243 -
Lal15g0274 581 Pfam STI1 domain 522 573 IPR041243 -
Lal15g0274 581 ProSiteProfiles TPR repeat profile. 426 459 IPR019734 GO:0005515
Lal15g0274 581 SUPERFAMILY TPR-like 252 380 IPR011990 GO:0005515
Lal15g0274 581 ProSiteProfiles TPR repeat region circular profile. 70 103 - -
Lal15g0274 581 Gene3D Tetratricopeptide repeat domain 250 386 IPR011990 GO:0005515
Lal15g0274 581 Coils Coil 364 384 - -
Lal15g0274 581 Gene3D - 128 195 - -
Lal15g0274 581 Gene3D Tetratricopeptide repeat domain 1 115 IPR011990 GO:0005515
Lal15g0274 581 Gene3D Tetratricopeptide repeat domain 390 505 IPR011990 GO:0005515
Lal15g0274 581 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Lal15g0274 581 Pfam Tetratricopeptide repeat 7 59 - -
Lal15g0274 581 Pfam Tetratricopeptide repeat 461 493 IPR019734 GO:0005515
Lal15g0274 581 MobiDBLite consensus disorder prediction 222 260 - -
Lal15g0274 581 PANTHER HSP70-HSP90 ORGANIZING PROTEIN 3 1 580 - -
Lal15g0274 581 ProSiteProfiles TPR repeat profile. 392 425 IPR019734 GO:0005515
Lal15g0274 581 SUPERFAMILY TPR-like 391 504 IPR011990 GO:0005515
Lal15g0274 581 ProSiteProfiles TPR repeat profile. 460 493 IPR019734 GO:0005515
Lal15g0274 581 PANTHER TPR REPEAT CONTAINING PROTEIN 1 580 IPR045248 GO:0006457|GO:0030544|GO:0051879
Lal15g0274 581 Gene3D - 512 581 - -
Lal15g0274 581 SMART tpr_5 460 493 IPR019734 GO:0005515
Lal15g0274 581 SMART tpr_5 287 320 IPR019734 GO:0005515
Lal15g0274 581 SMART tpr_5 2 35 IPR019734 GO:0005515
Lal15g0274 581 SMART tpr_5 328 365 IPR019734 GO:0005515
Lal15g0274 581 SMART tpr_5 36 69 IPR019734 GO:0005515
Lal15g0274 581 SMART tpr_5 426 459 IPR019734 GO:0005515
Lal15g0274 581 SMART tpr_5 392 425 IPR019734 GO:0005515
Lal15g0274 581 SMART tpr_5 253 286 IPR019734 GO:0005515
Lal15g0274 581 SMART tpr_5 70 103 IPR019734 GO:0005515
Lal15g0274 581 MobiDBLite consensus disorder prediction 206 260 - -
Lal15g0274 581 MobiDBLite consensus disorder prediction 109 135 - -
Lal15g0274 581 SMART CBM 137 176 IPR006636 -
Lal15g0274 581 SMART CBM 530 569 IPR006636 -
Lal15g0274 581 ProSiteProfiles TPR repeat profile. 253 286 IPR019734 GO:0005515
Lal15g0274 581 SUPERFAMILY TPR-like 2 114 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0274 Lal-Chr15 1858631 1863868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0274 1 99 U-box Gene Family AT3G07370 26.263 4.34e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0274 K09553 - gmx:100816776 952.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0337 16 2034963 2038387 Lal15g0274 15 1858631 1863868 LSH